Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tpr6g1065 ATGGTGACCGTAGAAGAGATTCGTAACGCTCAACGTTCTAAAGGCCCTGCCACTATCTTAGCTTTTGGCACAGCCACTCCTTCTCACTGTGTCACTCAAGCTGATTATCCTGATTACTACTTCCGTATCACCAATAGCGAGCACATGACTGATCTTAAGGAAAAATTCAAGCGCATGTGTGATAGATCAATGATAAAGAAACGTTACATGCACCTAACAGAAGACTTTCTGAAAGAGAATCCAAACATGTGTGAATACATGGCACCATCACTAGATGTAAGACAAGACATAGTTGTTGTTGAAGTACCAAAGCTAGGTAAAGAAGCAGCAAAAAAAGCCATAAGTGAATGGGGACAACCAAAATCCAAAATCACACATCTTGTTTTCTGCACCACTTCCGGTGTAGACATGCCGGGAGCCGATTACCAACTCACCAAACTCTTAGGCCTAAAACCTTCCGTCAAGCGTCTCATGATGTATCAACAAGGTTGTTTCGCTGGCGGCACGGTTCTCCGCTTAGCGAAAGACCTTGCTGAGAATAACAAAAATGCAAGAGTTCTTGTTGTTTGTTCTGAAATTACTGCGGTTACTTTTCGTGGACCATCGGATACTCATCTTGATTCACTCGTAGGACAAGCGCTTTTCGGTGATGGAGCCGCAGCGATGATTATCGGTGCGGATCCTGATTTAACCGTGGAGCGTCCTATTTTCGAGATTGTTTCGGCTGCTCAGACTATTCTTCCCGATTCTGATGGTGCAATTGATGGACATCTTCGTGAAGTGGGGCTCACTTTTCATTTATTGAAAGATGTTCCCGGGATTATTTCAAAGAACATTGAAAAAAGTTTAGTTGAAGCTTTTGCACCTATTGGGATTAATGATTGGAATTCGATATTTTGGGTTGCACATCCGGGTGGACCGGCTATTTTGGACCAGGTCGAAGAGAAACTCGGCCTCAAAGAGGAGAAACTTTTGTCCACCCGACATGTGCTTAGTGAATATGGAAATATGTCAAGTGCTTGTGTTTTGTTTATTTTGGATGAAATGAGGAAGAGGTCTAAAGAGGAAGGGAAGATTACAACCGGTGAAGGGTTGGAATGGGGTGTGTTATTTGGGTTTGGACCGGGTTTAACTGTTGAGACCGTTGTGCTTCATAGTGTTCCGGTTCAAGGTTGA 1176 0.4345 MVTVEEIRNAQRSKGPATILAFGTATPSHCVTQADYPDYYFRITNSEHMTDLKEKFKRMCDRSMIKKRYMHLTEDFLKENPNMCEYMAPSLDVRQDIVVVEVPKLGKEAAKKAISEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLKPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKNARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAMIIGADPDLTVERPIFEIVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGIISKNIEKSLVEAFAPIGINDWNSIFWVAHPGGPAILDQVEEKLGLKEEKLLSTRHVLSEYGNMSSACVLFILDEMRKRSKEEGKITTGEGLEWGVLFGFGPGLTVETVVLHSVPVQG* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tpr6g1065 391 SUPERFAMILY Thiolase-like 235 386 IPR016039 GO:0016746
Tpr6g1065 391 PIRSF PKS_III 2 389 IPR011141 GO:0009058|GO:0016747
Tpr6g1065 391 SUPERFAMILY Thiolase-like 1 232 IPR016039 GO:0016746
Tpr6g1065 391 Gene3D - 236 391 IPR016039 GO:0016746
Tpr6g1065 391 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 2 388 IPR011141 GO:0009058|GO:0016747
Tpr6g1065 391 ProSitePatterns Chalcone and stilbene synthases active site. 156 172 IPR018088 GO:0009058|GO:0016746
Tpr6g1065 391 PANTHER CHALCONE SYNTHASE 2 2 388 - -
Tpr6g1065 391 Pfam Chalcone and stilbene synthases, C-terminal domain 238 388 IPR012328 -
Tpr6g1065 391 CDD CHS_like 16 384 - -
Tpr6g1065 391 Pfam Chalcone and stilbene synthases, N-terminal domain 5 228 IPR001099 -
Tpr6g1065 391 Gene3D - 1 235 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tpr6g1065 Tpr-Chr6 10037364 10039546 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tpr6g1065 163 374 Miscellaneous Gene Families AT1G04220 25.101 1.81e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tpr6g1065 K00660 - gmx:100775264 725.702