Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu07g02897 ATGGTGACCGTAGAAGAGATTCGTAACGCACAACGTTCTAATGGACCTGCCACTATCTTAGCTTTTGGCACAGCAACTCCTTCTCACTGTGTCACTCAAGCTGATTATCCTGATTACTACTTCCGTATCACTAATAGCGAGCACATGACTGATCTTAAGGAAAAATTCAAGCGCatgtGTGATCGATCAATGATAAAGAAACGTTACATGCACCTAACAGAAGACTTTCTGAAAGAGAATCCAAACATGTGTGAATACATGGCACCATCCCTGGATGTAAGACAAgacattgttgttgttgaagtaCCAAAGCTAGGTAAAGAAGCGGCAAAAAAAGCCATAAGTGAATGGGGacaaccaaaatccaaaatcacACATCTTGTTTTTTGCACCACTTCCGGCGTAGACATGCCGGGTGCTGATTACCAACTCACCAAACTCTTAGGTCTAAAACCTTCCGTCAAGCGTCTCATGATGTATCAACAAGGTTGTTTCGCAGGCGGCACGGTTCTCCGCTTAGCGAAAGACCTTGCTGAGAATAACAAAAATGCAAGAGTTCTTGTTGTTTGTTCTGAAATTACCGCGGTTACTTTTCGTGGACCATCGGATACTCATCTTGATTCGCTTGTAGGACAAGCGCTTTTCGGTGATGGAGCCGCAGCGATGATTATTGGTGCGGATCCTGATTTAACCGTGGAGCGTCCTATTTTTGAGATTGTTTCCGCTGCTCAAACTATTCTTCCTGATTCTGATGGTGCAATCGATGGACATCTTCGTGAAGTGGGGCTGACTTTTCATTTATTGAAAGATGTTCCCGGGATTATTTCAAAGAACATTGAAAAAAGTTTAGTTGAAGCTTTTGCACCTATTGGAATTAATGATTGGAATTCAATATTTTGGGTTGCACATCCGGGTGGACCGGCTATTTTAGACCAGGTCGAAGAGAAACTCCGACTTAAGGCCGAGAAACTTCAATCCACTCGGCATGTGCTTAGTGAATATGGAAATATGTCAAGTGCatgtgttttgtttattttggatgAAATGAGGAAGAGGTCTAAAGAGGAAGGGAAGATTACAACCGGTGAAGGGTTGGAATGGGGTGTGTTGTTTGGGTTTGGACCGGGTTTAACCGTTGAGACCGTTGTGCTTCATAGTGTTCCGGTTCAGGGTTGA 1176 0.4141 MVTVEEIRNAQRSNGPATILAFGTATPSHCVTQADYPDYYFRITNSEHMTDLKEKFKRMCDRSMIKKRYMHLTEDFLKENPNMCEYMAPSLDVRQDIVVVEVPKLGKEAAKKAISEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLKPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKNARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAMIIGADPDLTVERPIFEIVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGIISKNIEKSLVEAFAPIGINDWNSIFWVAHPGGPAILDQVEEKLRLKAEKLQSTRHVLSEYGNMSSACVLFILDEMRKRSKEEGKITTGEGLEWGVLFGFGPGLTVETVVLHSVPVQG 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu07g02897 391 ProSitePatterns Chalcone and stilbene synthases active site. 156 172 IPR018088 GO:0009058|GO:0016746
Tsu07g02897 391 Gene3D - 236 391 IPR016039 GO:0016746
Tsu07g02897 391 PIRSF PKS_III 2 389 IPR011141 GO:0009058|GO:0016747
Tsu07g02897 391 Pfam Chalcone and stilbene synthases, C-terminal domain 238 388 IPR012328 -
Tsu07g02897 391 SUPERFAMILY Thiolase-like 235 386 IPR016039 GO:0016746
Tsu07g02897 391 CDD CHS_like 16 384 - -
Tsu07g02897 391 Gene3D - 1 235 IPR016039 GO:0016746
Tsu07g02897 391 PANTHER CHALCONE SYNTHASE 2 2 389 - -
Tsu07g02897 391 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 2 389 IPR011141 GO:0009058|GO:0016747
Tsu07g02897 391 Pfam Chalcone and stilbene synthases, N-terminal domain 5 228 IPR001099 -
Tsu07g02897 391 SUPERFAMILY Thiolase-like 1 232 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu07g02897 Tsu-Chr7 34230621 34232646 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu07g02897 128 383 Acyl Lipid Metabolism Gene Families AT1G71160 20.209 1.58e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu07g02897 K00660 - gmx:100775264 736.487