Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu4g1834 ATGGTGACCGTGGAGGAAATCCGCAACGCCCAGCGTTCCCATGGCCCCGCCACCATCTTGGCCTTCGGCACCGCCACTCCCTCCAACTGCGTCATCCAAGCCGATTACCCCGACTACTACTTCCGCATAACTAACAGCGAACACAAGACCGAcctcaaagaaaaattcaagcGCATGTGTGAGAAGTCGATGATAAAGAAGCGGTACATGCACCTGACGGAGGAGTTTCTGAAGGAGAACCCGAACATGTGCGCGTACATGGCACCGTCGCTGGACGCGAGGCAGGACATAGTGGTGGTTGAAGTGCCAAAGCTCGGGAAGGAGGCCGCGACAAAGGCGATCAAGGAGTGGGGTCAACCGAAGTCAAAGATCACGCACCTCGTGTTCTGCACCACTTCAGGGGTGGACATGCCCGGCGCAGATTACCAGCTCACGAAGCTTCTGGGCCTGAGACCCTCCGTGAAGCGCCTCATGATGTACCAGCAGGGCTGCTTCGCCGGCGGCACCGTGCTCCGCCTCGCGAAGGACCTCGCCGAGAACAACAAGGGCGCCAGGGTGCTCGTCGTCTGCTCCGAGATCACCGCCGTGACGTTCCGCGGCCCGTCGGACGCCCACCTCGACTCGCTCGTCGGGCAGGCGCTCTTCGGCGACGGCGCCGCGGCCGTCATCGTCGGCGCGGACCCCGACCCCGCGGTCGAGCGGCCGGTCTTCGAGCTCGTCTCGGCGGCGCAGACGATCCTGCCGGACTCCGAGGGCGCCATCGACGGCCACCTCCGCGAGGTGGGGCTGACGTTTCATCTTCTCAAGGACGTTCCCGGAATCATCTCGAAGAACATCGAGAAGAGTCTCGTGGAAGCTTTTGCGCCGATTGGGATCAGCGACTGGAACTCGATCTTTTGGGTCGCGCACCCGGGCGGACCGGCGATTCTGGACCAGGTCGAGGAGAAGCTCCGGCTCAAGGAGGAGAAGCTCCGGTCCACCCGGCACGTGCTGAGCGAGTACGGGAACATGTCCAGCGCGTGCGTTTTGTTTATTCTCGACGAGGTGAGGAAGAGGTCCAAGGAGGAAGGGAAGGGAACCACTGGGGAAGGGTTAGAGTGGGGGGTGCTATTCGGGTTCGGGCCGGGTCTGACCGTTGAGACCGTTGTGCTGCACAGCGTTCCCTTGGAGGGTTGA 1176 0.6148 MVTVEEIRNAQRSHGPATILAFGTATPSNCVIQADYPDYYFRITNSEHKTDLKEKFKRMCEKSMIKKRYMHLTEEFLKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDAHLDSLVGQALFGDGAAAVIVGADPDPAVERPVFELVSAAQTILPDSEGAIDGHLREVGLTFHLLKDVPGIISKNIEKSLVEAFAPIGISDWNSIFWVAHPGGPAILDQVEEKLRLKEEKLRSTRHVLSEYGNMSSACVLFILDEVRKRSKEEGKGTTGEGLEWGVLFGFGPGLTVETVVLHSVPLEG 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu4g1834 391 CDD CHS_like 16 384 - -
Ssu4g1834 391 SUPERFAMILY Thiolase-like 1 233 IPR016039 GO:0016746
Ssu4g1834 391 Coils Coil 310 330 - -
Ssu4g1834 391 ProSitePatterns Chalcone and stilbene synthases active site. 156 172 IPR018088 GO:0009058|GO:0016746
Ssu4g1834 391 Pfam Chalcone and stilbene synthases, N-terminal domain 5 228 IPR001099 -
Ssu4g1834 391 Gene3D - 1 235 IPR016039 GO:0016746
Ssu4g1834 391 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 2 389 IPR011141 GO:0009058|GO:0016747
Ssu4g1834 391 PIRSF PKS_III 2 388 IPR011141 GO:0009058|GO:0016747
Ssu4g1834 391 Pfam Chalcone and stilbene synthases, C-terminal domain 238 388 IPR012328 -
Ssu4g1834 391 SUPERFAMILY Thiolase-like 235 387 IPR016039 GO:0016746
Ssu4g1834 391 PANTHER CHALCONE SYNTHASE 2 2 389 - -
Ssu4g1834 391 Gene3D - 236 390 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu4g1834 Ssu-Chr4 33442050 33443685 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu4g1834 138 374 Miscellaneous Gene Families AT2G16280 24.074 3.52e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu4g1834 K00660 - gmx:100775264 741.495
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu4g1834 4 33442050 33443685 Ssu4g1834 4 33442050 33443685 ECH