Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja1g1663 ATGGTCACCGTCGAGGAGATCCGCAACGCTCAGCGTTCCAGTGGACCTGCCACCATCCTCGCCTTCGGCACCGCCACCCCTTCCCACTGCGTCATGCAAGCTGATTACCCTGACTACTACTTCCGCATCACCAACAGTGAACACATGACTGACCTCAAAGAAAAATTCAAGCGCATGTGTGAAAAGTCCATGATCAGGAAGCGGTACATGCACCTGACGGAGGAGATTCTGAAGGAGAATCCGGCCATGTGCGCGTACATGGCGCCGTCGCTGGATGCTCGTCAGGACCTGGTGGTGGTGGAGGTGCCGAAGCTAGGAAAAGAGGCGGCGGCGAAGGCGATCAAGGAGTGGGGTCAACCAAAGTCAAAGATCACTCACCTCGTTTTCTGCACCACCTCCGGCGTCGACATGCCCGGCGCAGACTACCAGCTCACCAAGCTTCTCGGCCTGAAACCCTCCGTGAAACGCCTCATGATGTACCAGCAAGGCTGCTTCGCCGGCGGCACGGTGCTTCGCCTGGCCAAGGATCTCGCCGAGAACAACAAAGGCGCAAGAGTCCTCGTCGTGTGTTCCGAAATCACCGCCGTCACCTTCCGCGGCCCATCTGACACCCACCTCGACTCCCTCGTCGGGCAGGCACTCTTCGGCGACGGCGCCGCCGCGATTATTGTCGGTGCAGATCCTGACCTCGCCGTGGAGCGTCCGATTTTCCAGCTGGTCTCCGCCGGGCAAACGATTCTCCCTGACTCCGACGGCGCGATCGACGGCCACCTCCGTGAGGTGGGGCTGACGTTCCACCTTCTCAAGGACGTTCCCGGGATCATCTCGAAGCACATTGAGAAGAGCTTATCGGAGGCGTTTGCGCCGATTGGGATTTCTGACTGGAACTCGCTGTTCTGGATCGCGCATCCGGGTGGACCGGCGATTTTGGACCAGGTTGAGGCGAAACTCCGGCTCAAAGAGGAGAAACTCCGGTCGACCCGGCACGTGCTGGGTGAGTATGGGAACATGTCAAGCGCGTGCGTGCTGTTTATTTTGGATGAGGTGCGGCGGAGGTCGAAGGAGGAAGGGAAGGAAACCACCGGAGATGGGTTGGAGTGGGGTGTTCTTTTCGGGTTCGGGCCGGGTCTCACCGTCGAGACCGTCGTGTTGCACAGTGTTCCCTTGGAGGCTTGA 1176 0.5952 MVTVEEIRNAQRSSGPATILAFGTATPSHCVMQADYPDYYFRITNSEHMTDLKEKFKRMCEKSMIRKRYMHLTEEILKENPAMCAYMAPSLDARQDLVVVEVPKLGKEAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLKPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAIIVGADPDLAVERPIFQLVSAGQTILPDSDGAIDGHLREVGLTFHLLKDVPGIISKHIEKSLSEAFAPIGISDWNSLFWIAHPGGPAILDQVEAKLRLKEEKLRSTRHVLGEYGNMSSACVLFILDEVRRRSKEEGKETTGDGLEWGVLFGFGPGLTVETVVLHSVPLEA* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja1g1663 391 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 2 389 IPR011141 GO:0009058|GO:0016747
Lja1g1663 391 Pfam Chalcone and stilbene synthases, N-terminal domain 5 228 IPR001099 -
Lja1g1663 391 CDD CHS_like 16 384 - -
Lja1g1663 391 PANTHER CHALCONE SYNTHASE 2 2 389 - -
Lja1g1663 391 PIRSF PKS_III 2 389 IPR011141 GO:0009058|GO:0016747
Lja1g1663 391 Coils Coil 310 330 - -
Lja1g1663 391 Pfam Chalcone and stilbene synthases, C-terminal domain 238 388 IPR012328 -
Lja1g1663 391 SUPERFAMILY Thiolase-like 235 387 IPR016039 GO:0016746
Lja1g1663 391 ProSitePatterns Chalcone and stilbene synthases active site. 156 172 IPR018088 GO:0009058|GO:0016746
Lja1g1663 391 SUPERFAMILY Thiolase-like 1 232 IPR016039 GO:0016746
Lja1g1663 391 Gene3D - 236 391 IPR016039 GO:0016746
Lja1g1663 391 Gene3D - 1 235 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja1g1663 Lja-Chr1 18265980 18268021 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja1g1663 163 383 Miscellaneous Gene Families AT3G52160 27.632 2.90e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja1g1663 K00660 - gmx:100775264 718.768
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja1g1663 1 18265980 18268021 Lja1g1663 1 18265980 18268021 ECH