Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g03706 ATGCCACAAGGTGATTCCAACGCTAGCTCCACGCAGCATGCTGCACTCGCTACTAAAACTAGGCGTGTGCCTACACCAGGGAAGGCCACAATACTTGCCATAGGCAAGGCTTTCCCTAGCCAAATCATCCCTCAGGAGTGTTTGGTTGAGGGATATATCCGTGACACTAAGTGTGTAGATGCTTATATTAAGGAGAAATTGGAGCGTAAAAACACCACTGTGAAGACAAGGTACACAGTGATGTCAAAGGAGATCCTTGACAAGTATCCAGAGTTGGCCACAGAGGGTTCCCCAACCATAAAGCAGAAGCTTGAAATAGCGAACCCTGCAGTGGTAGAGATGGCTACCAAGGCCAGCCTTTGCTGCATCAAGGAATGGGGAAGGCCTGCTCAAGACATCACCCACATTGTGTATGTTTCCTCAAGTGAAATAAGGCTACCAGGTGGTGACCTTTACTTGGCAAATGAGCTTGGTCTCAGGAGTGATGTTGGCCGTGTAATGCTCTACTTTCTAGGTTGCTATGGTGGTGTCACAGGCCTGAGAGTGGCCAAGGACATTGCAGAGAACAACCCTGGTAGCAGGGTTCTGGTGACTACCTCTGAGACCACCATTCTTGGGTTTAGACCCCCCAACAAGGCCAGGCCTTATGATCTTGTGGGGGCTGCACTTTTTGGTGATGGAGCTGCAGCTGTCATAGTTGGAGCAAACCCTGTGGTGGGTCAAGAGTCTCCTTTCATGGAATTGAGCTATGCTGTCCAAAAGTTTCTGCCTGAGACACACAGTGTGATTGATGGGAGACTCTCTGAAGAAGGCATAAACTTCAAACTTGGAAGAGATCTCCCTCAGAAAATTGAAGACAACATAGAAGAATTCTGCAGAAAGCTGATGGCAAAAAGCAATGTGAAGGAGTTCAATGATTTGTTCTGGGCAGTTCACCCTGGAGGGCCTGCAATTCTGAACAAGCTTGAGAGTACCCTGAAGTTGAGCAGTGAGAAGTTAGAGTGCAGTAGGAAGGCACTAATGGACTATGGCAATGTTAGCAGCAACACTATATTCTATGTGATGGAGTACATGAGGGAGTTTCTGAAAGATGGTGCTGAAGAATGGGGCTTGGGACTGGCATTTGGTCCAGGAATTACTTTTGAAGGCGTTCTCCTGCGCAGCCTCTGA 1170 0.4803 MPQGDSNASSTQHAALATKTRRVPTPGKATILAIGKAFPSQIIPQECLVEGYIRDTKCVDAYIKEKLERKNTTVKTRYTVMSKEILDKYPELATEGSPTIKQKLEIANPAVVEMATKASLCCIKEWGRPAQDITHIVYVSSSEIRLPGGDLYLANELGLRSDVGRVMLYFLGCYGGVTGLRVAKDIAENNPGSRVLVTTSETTILGFRPPNKARPYDLVGAALFGDGAAAVIVGANPVVGQESPFMELSYAVQKFLPETHSVIDGRLSEEGINFKLGRDLPQKIEDNIEEFCRKLMAKSNVKEFNDLFWAVHPGGPAILNKLESTLKLSSEKLECSRKALMDYGNVSSNTIFYVMEYMREFLKDGAEEWGLGLAFGPGITFEGVLLRSL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g03706 389 Gene3D - 245 389 IPR016039 GO:0016746
Vimu6g03706 389 CDD CHS_like 29 386 - -
Vimu6g03706 389 Gene3D - 3 244 IPR016039 GO:0016746
Vimu6g03706 389 MobiDBLite consensus disorder prediction 1 21 - -
Vimu6g03706 389 SUPERFAMILY Thiolase-like 21 240 IPR016039 GO:0016746
Vimu6g03706 389 FunFam Chalcone synthase 2 12 244 - -
Vimu6g03706 389 FunFam Chalcone synthase 1 245 389 - -
Vimu6g03706 389 Pfam Chalcone and stilbene synthases, N-terminal domain 20 237 IPR001099 -
Vimu6g03706 389 SUPERFAMILY Thiolase-like 224 388 IPR016039 GO:0016746
Vimu6g03706 389 MobiDBLite consensus disorder prediction 1 18 - -
Vimu6g03706 389 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 20 389 IPR011141 GO:0009058|GO:0016747
Vimu6g03706 389 PIRSF PKS_III 14 389 IPR011141 GO:0009058|GO:0016747
Vimu6g03706 389 Pfam Chalcone and stilbene synthases, C-terminal domain 247 389 IPR012328 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g03706 Vimu-Chr6 35115403 35116688 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g03706 153 379 Acyl Lipid Metabolism Gene Families AT1G71160 24.138 3.44e-14 72.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g03706 - - gmx:100793478 706.057
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g03706 6 35115403 35116688 Vimu6g03706 6 35115403 35116688 ECH