Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu1g0841 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lan3g1691 . Lasa6g02788 . . . . . . . . . . . . . Psa6g1236 . . . . . . . Tpr1g1671 . . . . . . . .
Pvu1g0842 . . . . . . . . . . . . . . . . . . . . . . . . . Gso17g1621 . . . . . . . Lasa6g02789 . . . . . . . . . . Phac7g01793 . . Psa6g1234 . . . . . . . Tpr1g1668 . . . . . . . .
Pvu1g0843 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa6g02790 . . . . . . . . . . . . . Psa6g1233 . . . . . . . Tpr1g1667 . . . . . . . .
Pvu1g0844 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu1g0845 . . . . Aev06g1906 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa6g00836 . . . . . . . . . . . . . . . . . . . . . Tpr6g2882 . . . . . . . .
Pvu1g0846 . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal25g1121 . . . . . Lasa6g02791 . . . . . . . . . . . . . . . . . . . . . Tpr1g1665 . . . . . . . .
Pvu1g0847 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa6g02795 . . . . . . . . . . . . . Psa6g1225 . . . . . . . Tpr1g1664 . . . . . . . .
Pvu1g0848 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa6g02797 . . . . . . . . . . . . . Psa6g1221 . . . . . . . Tpr1g1663 . . . . . . . .
Pvu1g0849 . . . . . . . . . Amo16g3343 . . . . . . . . . . . . . . . . . . . . . . . Lasa6g02801 . . . . . . . . . . . . . . . . . . . . . Tpr1g1662 . . . . . . . .
Pvu1g0850 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Pvu Pvu1g0841 Chr1 13381790 13389976 -
Lan Lan3g1691 Chr3 29347299 29362827 -
Lasa Lasa6g02788 Chr6 519859328 519869999 -
Psa Psa6g1236 Chr6 51882140 51892614 +
Tpr Tpr1g1671 Chr1 15893638 15902533 +
Pvu Pvu1g0842 Chr1 13421084 13424772 +
Gso Gso17g1621 Chr17 27391104 27396850 +
Lasa Lasa6g02789 Chr6 520022073 520024633 +
Phac Phac7g01793 Chr7 15233396 15237671 +
Psa Psa6g1234 Chr6 51459802 51462435 -
Tpr Tpr1g1668 Chr1 15857720 15861775 -
Pvu Pvu1g0843 Chr1 13423594 13433967 -
Lasa Lasa6g02790 Chr6 520025245 520036740 -
Psa Psa6g1233 Chr6 51450245 51459183 +
Tpr Tpr1g1667 Chr1 15847862 15857772 +
Pvu Pvu1g0844 Chr1 13428725 13429616 +
Pvu Pvu1g0845 Chr1 13514905 13519177 -
Aev Aev06g1906 Chr06 16007477 16017083 -
Lasa Lasa6g00836 Chr6 31637566 31640905 +
Tpr Tpr6g2882 Chr6 31240638 31241474 +
Pvu Pvu1g0846 Chr1 13600110 13604553 +
Lal Lal25g1121 Chr25 14567696 14570135 -
Lasa Lasa6g02791 Chr6 520776207 520778928 +
Tpr Tpr1g1665 Chr1 15834280 15840900 -
Pvu Pvu1g0847 Chr1 13666022 13670645 +
Lasa Lasa6g02795 Chr6 521525926 521528465 -
Psa Psa6g1225 Chr6 50974249 50977304 +
Tpr Tpr1g1664 Chr1 15803787 15808442 -
Pvu Pvu1g0848 Chr1 13673818 13685830 -
Lasa Lasa6g02797 Chr6 521549576 521557093 -
Psa Psa6g1221 Chr6 50471382 50479419 -
Tpr Tpr1g1663 Chr1 15794528 15801869 +
Pvu Pvu1g0849 Chr1 13700141 13712556 +
Amo Amo16g3343 Chr16 140865322 140870771 -
Lasa Lasa6g02801 Chr6 521633086 521642333 +
Tpr Tpr1g1662 Chr1 15774794 15785700 -
Pvu Pvu1g0850 Chr1 13701053 13701607 +
Tpr Tpr6g2882 Chr6 31240638 31241474 +