Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele06g0467 ATGGTCACCGTCGACGAGATCCGCAACACCCAGCGTTCCCATGGCCCCGCCACCATCCTATCCTTCGGCACCGCCACCCCCTCTAACTGTGTCATCCAAGCAGACTACCCCGACTACTACTTCCGCATCACTCAGAGCGAGCACATGACCGATCTCAAGGAGAAGTTCAAGCGCATGTGTGACAAATCTATGATCAAGAAGCGTTACATGCACTTGACGGAGGAGATACTGAAGGAGAACCCCAACATGTGCGCTTACATGGCTCCCTCTTTGGACGTTCGTCAGGACATAGTGGTGGTTGAGATCCCTAAACTTGGCAAGGAAGCCGCCGTCAAAGCCATTAAGGAGTGGGGTCAGCCCAAGTCCAAGATTACCCACCTCGTCTTCTGTACCACTTCTGGCGTCGACATGCCCGGAGCCGATTATCAGCTCACCAAGCTTCTCGGCCTCAGACCCTCCGTCAAGCGACTCATGATGTACCAGCAAGGCTGCTTCGCCGGAGGCACCGTCCTCCGCCTCGCCAAGGACCTCGCCGAGAACAACAAGGGCGCCCGTGTTCTCGTCGTCTGCTCTGAGATCACCGCCGTCACTTTCCGTGGTCCCTCCGACACTCACCTCGACTCACTTGTGGGCCAGGCGCTCTTCGGCGACGGCGCTGCGGCCATGATCATCGGCGCTGATCCCGACACCTCCATCGAGCGCCCGATCTTCGAGATGGTGTCGGCAGCGCAGACCATCTTGCCCGACTCTGACGGAGCCATCGACGGACACCTGCGGGAAGTGGGTCTCACGTTCCACTTGCTGAAGGACGTTCCCGGGATCATCTCGAAGAACATTGAGAAGAGCTTGGTGGAGGCGTTTAACCCCATTGGCATTAACGACTGGAATTCCATCTTCTGGGTCGCCCACCCCGGTGGTCCGGCGATTCTGGATCAGGTGGAGGCCAAGCTGGGGCTGAAAGAAGAGAAGCTCGCACCGACCAGGCACGTTCTGAGCGAGTACGGGAACATGTCAAGCGCGTGTGTCATCTTCATATTGGACGAGTTGAGGAAGAGGTCAATGAAAGAGGGGAAGGCCACCACGGGAGATGGGTTGGAGTGGGGAGTCTTGTTCGGGTTCGGGCCGGGTCTAACGGTGGAGACAGTGGTGTTGCACAGTGTTCCCGTGTAA 1170 0.5786 MVTVDEIRNTQRSHGPATILSFGTATPSNCVIQADYPDYYFRITQSEHMTDLKEKFKRMCDKSMIKKRYMHLTEEILKENPNMCAYMAPSLDVRQDIVVVEIPKLGKEAAVKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAMIIGADPDTSIERPIFEMVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGIISKNIEKSLVEAFNPIGINDWNSIFWVAHPGGPAILDQVEAKLGLKEEKLAPTRHVLSEYGNMSSACVIFILDELRKRSMKEGKATTGDGLEWGVLFGFGPGLTVETVVLHSVPV 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele06g0467 389 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 4 387 IPR011141 GO:0009058|GO:0016747
Lele06g0467 389 SUPERFAMILY Thiolase-like 235 386 IPR016039 GO:0016746
Lele06g0467 389 Pfam Chalcone and stilbene synthases, C-terminal domain 238 388 IPR012328 -
Lele06g0467 389 FunFam Chalcone synthase 1 236 388 - -
Lele06g0467 389 FunFam Chalcone synthase 2 1 235 - -
Lele06g0467 389 PIRSF PKS_III 2 389 IPR011141 GO:0009058|GO:0016747
Lele06g0467 389 Pfam Chalcone and stilbene synthases, N-terminal domain 5 228 IPR001099 -
Lele06g0467 389 CDD CHS_like 16 384 - -
Lele06g0467 389 Gene3D - 1 235 IPR016039 GO:0016746
Lele06g0467 389 ProSitePatterns Chalcone and stilbene synthases active site. 156 172 IPR018088 GO:0009058|GO:0016746
Lele06g0467 389 SUPERFAMILY Thiolase-like 1 233 IPR016039 GO:0016746
Lele06g0467 389 Gene3D - 236 389 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele06g0467 Lele-ChrLele06 2850035 2851305 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele06g0467 150 374 Miscellaneous Gene Families AT1G04220 25.483 7.92e-09 55.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele06g0467 06 2850035 2851305 Lele06g0467 06 2850035 2851305 ECH
Lele06g0467 06 2850035 2851305 Lele07g0676 07 3848702 3850137 hybridization