Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pste5g00979 CTACCATTCCCTCAAATCTCAAATCACAGTTTCATCTATTCTTTCCCTTCACCCACCCCCCATTACCCAATGGTCACAGTGGAGGAAATCCGCAACGCCCAGCGTTCCCATGGCCCCGCCACCATCTTGGCCTTCGGCACCGCCACACCCTCAAACTGCATCACCCAAGCCGATTACCCTGACTACTACTTCCGCATTACCAACAGCCAACACATGACCCAACTCAAAGAAAAGTTCAAACGCATGTGTGAAAAGTCGATGATAAGGAAGCGATACATGCACCTGACGGAGGAGTTTCTGAAGGAGAATCCGAGCATGTGCGCTTACATGGCGCCGTCGCTGGACGTGAGGCAGGACATAGTGGTGGTGGAGGTGCCGAAGCTTGGAAAACAAGCCGCAGCGAAAGCTATTAAAGAGTGGGGTCAACCAAAGTCAAAGATAACGCATCTCGTGTTCTGCACCACTTCGGGTGTGGACATGCCCGGAGCAGATTACCAACTCACCAAGCTTCTAGGCCTGAAGCCCTCCGTGAAGCGCCTCATGATGTATCAGCAGGGCTGCTTCGCTGGCGGCACCGTCCTCCGCCTCGCCAAGGACCTGGCCGAGAACAATAAGGGAGCTAGGGTTCTCGTTGTTTGTTCTGAGATCACCGCCGTGACATTCCGTGGTCCCTCCGACACCCACCTCGACTCGCTCGTCGGGCAGGCGTTGTTCGGAGACGGTGCGGCGGCGATGATCATCGGAGCAGATCCGGATAGAACTGTGGAGCGACCCATATTTGAGTTAGTATCGGCCGCTCAGACAATCTTACCGGACTCCGATGGTGCGATCGACGGACATCTACGAGAAGTGGGACTCACGTTTCATCTCTTGAAAGACGTGCCCGGGATCATCTCGAAAAACATTGAGAAGAGTCTTGTGGAAGCTTTTTCGCCTCTTGGTATTAGTGACTGGAACTCTATCTTTTGGATTGCGCACCCGGGTGGACCGGCCATTCTGGACCAAGTTGAGGAGAAGCTTCAGCTGAAACCGGAGAAACTCCGGTCCACCCGGCACGTGCTGAGCGAGTACGGGAACATGTCCAGCGCTTGCGTTTTGTTCATTTTGGACGAAATGAGGAAGAAGTCGAAGGAGGAAGAGAAGGGCACGAGTGGCGAAGGGTTGGAGTGGGGGGTGCTATTCGGCTTCGGACCGGGTCTAACGGTTGAAACCGTTGTGCTGCACAGTGTTGCTTTCGAGTGA 1242 0.5435 LPFPQISNHSFIYSFPSPTPHYPMVTVEEIRNAQRSHGPATILAFGTATPSNCITQADYPDYYFRITNSQHMTQLKEKFKRMCEKSMIRKRYMHLTEEFLKENPSMCAYMAPSLDVRQDIVVVEVPKLGKQAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLKPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAMIIGADPDRTVERPIFELVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGIISKNIEKSLVEAFSPLGISDWNSIFWIAHPGGPAILDQVEEKLQLKPEKLRSTRHVLSEYGNMSSACVLFILDEMRKKSKEEEKGTSGEGLEWGVLFGFGPGLTVETVVLHSVAFE 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pste5g00979 413 CDD CHS_like 39 407 - -
Pste5g00979 413 Gene3D - 18 258 IPR016039 GO:0016746
Pste5g00979 413 SUPERFAMILY Thiolase-like 24 255 IPR016039 GO:0016746
Pste5g00979 413 FunFam Chalcone synthase 1 259 411 - -
Pste5g00979 413 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 27 410 IPR011141 GO:0009058|GO:0016747
Pste5g00979 413 Pfam Chalcone and stilbene synthases, C-terminal domain 261 410 IPR012328 -
Pste5g00979 413 ProSitePatterns Chalcone and stilbene synthases active site. 179 195 IPR018088 GO:0009058|GO:0016746
Pste5g00979 413 PIRSF PKS_III 25 412 IPR011141 GO:0009058|GO:0016747
Pste5g00979 413 Gene3D - 259 412 IPR016039 GO:0016746
Pste5g00979 413 Pfam Chalcone and stilbene synthases, N-terminal domain 28 251 IPR001099 -
Pste5g00979 413 FunFam Chalcone synthase 2 23 258 - -
Pste5g00979 413 SUPERFAMILY Thiolase-like 258 409 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pste5g00979 Pste-Chr5 6402128 6403715 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pste5g00979 173 397 Miscellaneous Gene Families AT4G34510 24.138 9.89e-10 58.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pste5g00979 5 6402128 6403715 Pste5g00979 5 6402128 6403715 ECH