Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ahy16g2339 ATGGTGAGTGTGGAAGAGATCCGCAACGCTGCGCGTGCGAATGGGCCAGCAACGGTGTTGGCCATTGGCACCGCCACACCTTCCAACTGTGTGTACCAAGACACGTACCCTGACTACTATTTTCGAATCACCAATAGCGAGCACATGACTGATCTTAAAGAGAAGTTCAAGCGAATGTGTGAGAAGTCCATGATCAGGAAGAGGTACATGCACCTAACAGAGGATTTCCTAAAGAAGAATCCCAGCATGTGTGAGTACATGGCGCCATCGTTGGACGCAAGACAGGACATAGTGGTGGTTGAAGTTCCAAAGCTCGGAAAAGAAGCGGCCACCAAAGCCATCAAGGACTGGGGCCAACCCAAATCCAAGATCACCCACCTCGTCTTCTGCACCACCTCCGGCGTCGACATGCCCGGTGCCGACTACCAGCTCACCAAGCTTCTCGGCCTCCGCTCCTCCGTCAAGCGCCTCATGATGTACCAGCAGGGCTGCTTCGCAGGAGGGACGGTCCTTCGACTCGCGAAGGATCTTGCGGAGAACAACAAGAACGCTCGCGTCCTTGTTGTCTGCTCTGAGATCACTGCCGTCACGTTCCGTGGTCCCTCGGACACGCACCTGGATTCCATGGTGGGCCAGGCGTTGTTCGGGGATGGAGCGGCAGCAGTGATCGTGGGAGCCGATCCCGACACCAAAGTGGAACGTCCGTTGTTCGAGATGGTGTCGGCGGGTCAGACGATCTTGCCGGACTCCGAAGGTGCCATCGATGGTCATCTGAGAGAGGTTGGACTAACGTTTCACCTGCTGAAGGATGTTCCGGGGATCATATCAAAGAATATTGAGAAGAGTTTGGTGGAGGCTTTTACTCCCATTGGGATCAGTGATTGGAACTCTATCTTCTGGATAGCGCACCCAGGTGGACCTGCTATATTAGACCAGGTTGAAGCTAAGCTACAACTGAAGGAAGAGAAGCTGAAAGCCACTCGCCACGTGTTGGGAGAGTATGGAAACATGTCAAGTGCATGTGTGCTTTTCATTTTGGATGAGATGAGAAAGAGGTCAATTGAAGAAGGCAAGGCCACCACCGGAGAAGGCTTCGATTGGGGGGTCCTATTCGGGTTCGGACCGGGTCTTACGGTGGAGACGGTGGTGCTTCACAGTCTTCCCTTGGAAAATCTATCTTGA 1182 0.5355 MVSVEEIRNAARANGPATVLAIGTATPSNCVYQDTYPDYYFRITNSEHMTDLKEKFKRMCEKSMIRKRYMHLTEDFLKKNPSMCEYMAPSLDARQDIVVVEVPKLGKEAATKAIKDWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRSSVKRLMMYQQGCFAGGTVLRLAKDLAENNKNARVLVVCSEITAVTFRGPSDTHLDSMVGQALFGDGAAAVIVGADPDTKVERPLFEMVSAGQTILPDSEGAIDGHLREVGLTFHLLKDVPGIISKNIEKSLVEAFTPIGISDWNSIFWIAHPGGPAILDQVEAKLQLKEEKLKATRHVLGEYGNMSSACVLFILDEMRKRSIEEGKATTGEGFDWGVLFGFGPGLTVETVVLHSLPLENLS* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ahy16g2339 393 SUPERFAMILY Thiolase-like 1 233 IPR016039 GO:0016746
Ahy16g2339 393 CDD CHS_like 16 384 - -
Ahy16g2339 393 Coils Coil 310 330 - -
Ahy16g2339 393 PIRSF PKS_III 2 388 IPR011141 GO:0009058|GO:0016747
Ahy16g2339 393 Pfam Chalcone and stilbene synthases, N-terminal domain 5 228 IPR001099 -
Ahy16g2339 393 Gene3D - 236 392 IPR016039 GO:0016746
Ahy16g2339 393 ProSitePatterns Chalcone and stilbene synthases active site. 156 172 IPR018088 GO:0009058|GO:0016746
Ahy16g2339 393 Gene3D - 1 235 IPR016039 GO:0016746
Ahy16g2339 393 SUPERFAMILY Thiolase-like 235 386 IPR016039 GO:0016746
Ahy16g2339 393 PANTHER CHALCONE SYNTHASE 2 2 389 - -
Ahy16g2339 393 Pfam Chalcone and stilbene synthases, C-terminal domain 238 388 IPR012328 -
Ahy16g2339 393 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 2 389 IPR011141 GO:0009058|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ahy16g2339 Ahy-Chr16 129029017 129033159 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ahy16g2339 138 374 Miscellaneous Gene Families AT4G34520 24.638 1.65e-09 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ahy16g2339 K00660 - gmx:100775264 697.197
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ahy16g2339 16 129029017 129033159 Ahy16g2339 16 129029017 129033159 ECH