Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu1g00491 ATGGTGACAGTCGAGGAAATCCGCAACGCCCAGCGCTCCCATGGCCCCGCCACCATTCTCGCCTTCGGCACCGCCACGCCCTCCAACTGCGTCTCCCAAGAGGATTACCCTGACTACTACTTCCGCATTACCAACAGCGAACACATGACCGACCTCAAGGAGAAGTTCAAGCGCATGTGTGAAAAGTCGATGATAAAGAAGCGTTACATGCACCTGACGGAGGAGTTTCTGAAGGAGAATCCGAACATGTGTGCGTACATGGCGCCGTCGTTGGACGCGAGGCAGGACATAGTGGTGGTGGAAGTGCCGAAGCTGGGGAAAGAAGCGGCAACGAAGGCGATAAAGGAGTGGGGTCAACCCAAGTCAAAGATCACACACCTGGTGTTCTGCACCACTTCAGGCGTGGACATGCCCGGAGCGGATTACCAGCTCACCAAGCTTCTCGGTCTGAGGCCCTCCGTGAAGCGCCTCATGATGTACCAGCAGGGCTGCTTCGCTGGCGGCACAGTCCTCCGCCTCGCCAAGGACCTCGCCGAGAACAACAAGGGCGCCCGAGTACTCGTAGTCTGCTCAGAAATCACCGCCGTGACATTCCGCGGCCCGTCTGATGCCCACCTGGACTCCCTCGTCGGGCAGGCACTGTTCGGGGACGGCGCCGCCGCGATGATCATCGGAGCAGATCCTGACAGGAAAGTAGAACGCCCGATATTTGAATTGGTATCAGCCGCTCAGACCATTCTGCCAGACTCTGACGGTGCCATCGACGGGCACTTGAGGGAGGTGGGGCTAACGTTTCACCTGCTAAAAGACGTGCCCGGAATCATCTCGAAGAACATTGAAAAGAGTCTGACAGAGGCGTTCGCACCGATTGGGATTAATGACTGGAACTCGATCTTCTGGGTGGCACACCCGGGTGGACCAGCGATTCTGGACCAGGTTGAGGAGAAACTGGGGCTGAAACCGGAGAAACTCCGGTCCACCCGGCACGTGCTGAGCGAGTACGGAAACATGTCAAGTGCATGTGTTTTGTTCATTCTTGATGAAATGAGGAAAAGGTCGAAGGAGGAAGAGAAGGGTAGCACAGGAGAAGGCCTAGAGTGGGGTGTGTTATTCGGGTTCGGACCGGGTCTAACCGTTGAGACGGTTGTGCTGCACAGCGTTCCGTTGAGGGTTTTCCAATGCTACTACTCATTTGGAGAAGGGATAGAAACCCATCTTGCTAGCTCCTTTCTTGCTGTCTCATTCCTGTTCCACTAA 1257 0.5593 MVTVEEIRNAQRSHGPATILAFGTATPSNCVSQEDYPDYYFRITNSEHMTDLKEKFKRMCEKSMIKKRYMHLTEEFLKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDAHLDSLVGQALFGDGAAAMIIGADPDRKVERPIFELVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGIISKNIEKSLTEAFAPIGINDWNSIFWVAHPGGPAILDQVEEKLGLKPEKLRSTRHVLSEYGNMSSACVLFILDEMRKRSKEEEKGSTGEGLEWGVLFGFGPGLTVETVVLHSVPLRVFQCYYSFGEGIETHLASSFLAVSFLFH* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu1g00491 418 ProSitePatterns Chalcone and stilbene synthases active site. 156 172 IPR018088 GO:0009058|GO:0016746
Lapu1g00491 418 Gene3D - 1 235 IPR016039 GO:0016746
Lapu1g00491 418 SUPERFAMILY Thiolase-like 235 387 IPR016039 GO:0016746
Lapu1g00491 418 CDD CHS_like 16 384 - -
Lapu1g00491 418 FunFam Chalcone synthase 1 236 388 - -
Lapu1g00491 418 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 4 387 IPR011141 GO:0009058|GO:0016747
Lapu1g00491 418 PIRSF PKS_III 2 389 IPR011141 GO:0009058|GO:0016747
Lapu1g00491 418 FunFam Chalcone synthase 2 1 235 - -
Lapu1g00491 418 Pfam Chalcone and stilbene synthases, N-terminal domain 5 228 IPR001099 -
Lapu1g00491 418 Gene3D - 236 393 IPR016039 GO:0016746
Lapu1g00491 418 SUPERFAMILY Thiolase-like 1 232 IPR016039 GO:0016746
Lapu1g00491 418 Pfam Chalcone and stilbene synthases, C-terminal domain 238 388 IPR012328 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu1g00491 Lapu-Chr1 16245675 16247980 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu1g00491 105 368 Acyl Lipid Metabolism Gene Families AT1G62640 26.246 4.60e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu1g00491 K00660 - gmx:100775264 721.079
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu1g00491 1 16245675 16247980 Lapu1g00491 1 16245675 16247980 ECH