Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva04g01917 atggttaGCGTGGAGGAGATCCGCAAGGCCCAGCGTTCCCATGGCCCTGCCACCATTTTGGCCTTTGGCACTGCCACCCCCTCCAACTGTGTTATTCAAGCTGATTACCCTGATTACTATTTCCGCATCACCAACAGCGAGCACATGACTGATCtcaaagaaaagtttaagcgcatgtGTGAAAAATCTATGATCAAGAAGCGTTATATGCACCTGACAGAGGATATTCTGAAGGAGAATCCCAACGTTTGTGCTTACATGGCTCCTTCTCTGGACGTTCGTCAAGATATAGTGGTGGTGGAAGTACCCAAGCTCGGAAAAGAAGCAGCCCAGAAGGCTATCAAGGAGTGGGGGCAACCCAAATCCAAGATTACCCACCTCGTTTTCTGTACCACCTCCGGCGTCGACATGCCCGGAGCTGATTACCAGCTCACTAAGCTTCTCGGCCTCAGACCTTCTGTCAAGCGTCTCATGATGTACCAACAGGGTTGCTTCGCTGGAGGCACGGTTCTCCGTCTTGCTAAGGATTTGGCAGAGAACAACAAGGGTGCACGTGTTCTCGTCGTTTGCTCTGAGATCACCGCCGTCACTTTCCGTGGCCCCTCCGACACCCACCTCGATTCCTTGGTGGGACAGGCATTGTTCGGCGATGGAGCCGCCGCCATGATCATCGGTGCCGATCCCGACACCTCCGTGGAGCGCCCCATTTTCCAGCTCGTATCGGCGGCGCAGACCATCTTGCCGGACTCCGACGGTGCCATCGACGGGCACTTGCGCGAGGTGGGGCTCACATTCCACTTGCTCAAGGACGTGCCCGGGATTATATCCAAAAACATCGAGAAGAGCTTAGTGGAAGCCTTCACGCCTATTGGCATCAACGATTGGAACTCTCTTTTCTGGATCGCCCACCCGGGTGGCCCGGCAATTCTGGATCAGGTTGAGGCCAAGCTCGGGTTGAAGGAAGACAAGCTCCGATCAACCCGACACGTGTTGAGCGAGTACGGCAACATGTCAAGCGCCTGTGTTATTTTTATCCTAGACGAAATGAGGAAGAAGTCGTTGGAGGAAGGGAAGCCAACCACCGGGGAAGGTTTAGAATGGGGTGTGCTATTCGGGTTCGGGCCGGGTCTTACGGTGGAGACAATTGTCATGCACAGTGTTCTTTCGGAGGGTCATTA 1178 0.5306 MVSVEEIRKAQRSHGPATILAFGTATPSNCVIQADYPDYYFRITNSEHMTDLKEKFKRMCEKSMIKKRYMHLTEDILKENPNVCAYMAPSLDVRQDIVVVEVPKLGKEAAQKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAMIIGADPDTSVERPIFQLVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGIISKNIEKSLVEAFTPIGINDWNSLFWIAHPGGPAILDQVEAKLGLKEDKLRSTRHVLSEYGNMSSACVIFILDEMRKKSLEEGKPTTGEGLEWGVLFGFGPGLTVETIVMHSVLSEGH 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva04g01917 392 Gene3D - 236 389 IPR016039 GO:0016746
Bva04g01917 392 Gene3D - 1 235 IPR016039 GO:0016746
Bva04g01917 392 PANTHER CHALCONE SYNTHASE 2 2 388 - -
Bva04g01917 392 PIRSF PKS_III 2 388 IPR011141 GO:0009058|GO:0016747
Bva04g01917 392 SUPERFAMILY Thiolase-like 235 386 IPR016039 GO:0016746
Bva04g01917 392 Pfam Chalcone and stilbene synthases, N-terminal domain 5 228 IPR001099 -
Bva04g01917 392 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 2 388 IPR011141 GO:0009058|GO:0016747
Bva04g01917 392 Pfam Chalcone and stilbene synthases, C-terminal domain 238 387 IPR012328 -
Bva04g01917 392 ProSitePatterns Chalcone and stilbene synthases active site. 156 172 IPR018088 GO:0009058|GO:0016746
Bva04g01917 392 CDD CHS_like 16 384 - -
Bva04g01917 392 SUPERFAMILY Thiolase-like 1 233 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva04g01917 Bva-Chr4 19480405 19482299 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bva04g01917 138 370 Acyl Lipid Metabolism Gene Families AT5G04530 22.939 3.61e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva04g01917 K00660 - gmx:100775264 723.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bva04g01917 04 19480405 19482299 Bva04g01917 04 19480405 19482299 ECH