Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa5g01902 ATGGTGACCGTGGAGGAGATTCGCAACGCTCAACGTTCCAATGGCCCTGCCACCATCTTGGCTTTCGGCACAGCCACTCCTTCCAACTGCATAACGCAAGCTGAGTATCCTGATTACTACTTTCGCATCACCAACAGCGAGCACATGACTGACCTAAAAGAGAAATTTAAGCGCATGTGTGATAAATCGATGATAAAGAAACGTTACATGCACTTAACTGAGGATTTTTTGAAGGAGAATCCTAACATGTGTGAATTCATGGCACCATCACTGGATGTGAGGCAAGATATTGTGGTGGTGGAAGTGCCGAAGTTAGGAAAAGATGCAGCAAAAAAGGCTATAGCTGAATGGGGACAACCGAAATCCAAGATCACTCATGTCGTTTTCTGCACCACGTCAGGTGTAGACATGCCAGGAGCAGATTACCAGTTGACGAAGCTACTAGGTCTTAAGCCGTCTGTAAAGCGTCTGATGATGTATCAGCAAGGTTGTTTCGCTGGCGGGACGGTTCTCCGTCTAGCGAAAGATCTTGCCGAGAACAACAAGAACTCGAGAGTTCTTGTTGTTTGCTCTGAGATTACTGCTGTGACTTTCCGCGGTCCGTCGGAGAGTCATTTGGATTCTCTCGTCGGACAGGCACTCTTCGGCGATGGAGCCGCTGCGATGATTATCGGGGCGGATCCTGATTTGGCCGTGGAACGTCCGATATTCGAGATTGTTTCGGCTGCTCAGACGATTCTTCCGGATTCGGATGGGGCCATCGACGGACATCTTCGTGAAGTGGGGCTCACTTTTCATTTGCTGAAAGATGTTCCTGGGATTATTTCGAAGAACATTGAGAAGAGTTTGGTTGAGGCTTTTGAACCGATTGGGATAAATGATTGGAACTCGATTTTTTGGGTTGCGCATCCGGGTGGACCGGCTATTTTGGACCAGGTTGAGGAGAAACTCCGGTTGAAGGAAGAGAAACTCCGGTCTACTAGGCATGTGCTAAGTGAGTATGGGAATATGTCTAGTGCTTGTGTTTTGTTTATTTTGGATGAAATGAGGAAGCGGTCTAAGGAAGAAGGGAAGGTTACGACCGGTGAAGGGTTGGAGTGGGGGGTTTTGTTTGGGTTTGGACCGGGTTTGACTGTTGAGACGGTTGTTCTTCATAGTGTGCCGGTTCAGGGTTGA 1176 0.4813 MVTVEEIRNAQRSNGPATILAFGTATPSNCITQAEYPDYYFRITNSEHMTDLKEKFKRMCDKSMIKKRYMHLTEDFLKENPNMCEFMAPSLDVRQDIVVVEVPKLGKDAAKKAIAEWGQPKSKITHVVFCTTSGVDMPGADYQLTKLLGLKPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKNSRVLVVCSEITAVTFRGPSESHLDSLVGQALFGDGAAAMIIGADPDLAVERPIFEIVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGIISKNIEKSLVEAFEPIGINDWNSIFWVAHPGGPAILDQVEEKLRLKEEKLRSTRHVLSEYGNMSSACVLFILDEMRKRSKEEGKVTTGEGLEWGVLFGFGPGLTVETVVLHSVPVQG 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa5g01902 391 Coils Coil 310 330 - -
Vifa5g01902 391 PIRSF PKS_III 2 389 IPR011141 GO:0009058|GO:0016747
Vifa5g01902 391 CDD CHS_like 16 384 - -
Vifa5g01902 391 ProSitePatterns Chalcone and stilbene synthases active site. 156 172 IPR018088 GO:0009058|GO:0016746
Vifa5g01902 391 Gene3D - 236 391 IPR016039 GO:0016746
Vifa5g01902 391 SUPERFAMILY Thiolase-like 1 232 IPR016039 GO:0016746
Vifa5g01902 391 FunFam Chalcone synthase 2 1 235 - -
Vifa5g01902 391 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 4 387 IPR011141 GO:0009058|GO:0016747
Vifa5g01902 391 FunFam Chalcone synthase 1 236 388 - -
Vifa5g01902 391 Pfam Chalcone and stilbene synthases, N-terminal domain 5 228 IPR001099 -
Vifa5g01902 391 Pfam Chalcone and stilbene synthases, C-terminal domain 238 388 IPR012328 -
Vifa5g01902 391 SUPERFAMILY Thiolase-like 235 386 IPR016039 GO:0016746
Vifa5g01902 391 Gene3D - 1 235 IPR016039 GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa5g01902 Vifa-Chr5 550390274 550391559 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa5g01902 128 383 Acyl Lipid Metabolism Gene Families AT1G71160 22.028 2.19e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa5g01902 K00660 - gmx:100775264 727.243
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa5g01902 5 550390274 550391559 Vifa5g01902 5 550390274 550391559 ECH