Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi6g03317 ATGGTGTCCGTAGAGGAGATTCGCAACGCTCAGCGTTCCAAAGGCCCTGCCACTATCCTCGCTTTCGGCACAGCCACTCCTTCCAACTGCGTTACACAAGCTGAGTACCCGGATTATTACTTCCGTATTACCAACAGCGAGCACATGACTGATCTCAAGGAGAAATTCAAGCGCATGTGTGATAGATCCATGATAAAGAAACGTTACATGCACTTGACTGAGGATTTTCTGAAGGAGAATCCTAACATGTGTGAATACATGGCACCATCACTGGATGCGAGACAGGATATCGTGGTGGTGGAAGTGCCGAAGTTGGGTAAAGATGCAGCGAAAAAAGCGATAGCTGATTGGGGACAACCGAAATCCAAGATCACTCATCTTGTTTTCTGCACTACTTCCGGTGTTGACATGCCGGGAGCAGATTACCAGTTGACGAAGCTTTTAGGGCTTAAACCGTCTGTGAAACGTCTGATGATGTATCAGCAAGGTTGCTTCGCCGGCGGGACGGTTCTCCGGTTGGCGAAGGATCTTGCTGAGAATAACAAGAATGCTAGAGTTCTTGTTGTTTGCTCAGAGATTACTGCGGTGACTTTCCGTGGTCCATCAGAGACTCATTTGGATTCTTTGGTTGGACAGGCGCTCTTCGGCGATGGAGCCGCAGCGATGATTATCGGTGCGGATCCAGATACAGCCGTGGAGCGTCCGATATTCGAGATTGTTTCGGCTGCTCAGACGATTCTTCCGGATTCTGATGGCGCGATTGACGGACATCTTCGTGAAGTGGGGCTTACTTTTCATTTGCTGAAAGATGTTCCTGGGATTATTTCGAAGAATATTGAGAAGAGTTTGGTTGAGGCTTTTGAACCGATTGGGATAAAGGATTGGAATTCAATTTTTTGGGTTGCGCATCCGGGTGGACCGGCTATTTTGGACCAGGTTGAGGAGAAACTCGGGTTGAAGGAAGAGAAACTCCGGTCTACTAGGCATGTGCTTAGTGAGTATGGAAATATGTCTAGTGCTTGTGTTTTGTTTATTTTGGATGAAATGAGGAAGCGGTCTAAGGAAGAAGGGAAGGTTACGACCGGGGAAGGGTTGGAGTGGGGGGTTTTGTTTGGGTTTGGACCGGGTTTGACCGTTGAGACCGTTGTTCTTCATAGTGTGCCGGTTCAGGGATGA 1176 0.4821 MVSVEEIRNAQRSKGPATILAFGTATPSNCVTQAEYPDYYFRITNSEHMTDLKEKFKRMCDRSMIKKRYMHLTEDFLKENPNMCEYMAPSLDARQDIVVVEVPKLGKDAAKKAIADWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLKPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKNARVLVVCSEITAVTFRGPSETHLDSLVGQALFGDGAAAMIIGADPDTAVERPIFEIVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGIISKNIEKSLVEAFEPIGIKDWNSIFWVAHPGGPAILDQVEEKLGLKEEKLRSTRHVLSEYGNMSSACVLFILDEMRKRSKEEGKVTTGEGLEWGVLFGFGPGLTVETVVLHSVPVQG 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi6g03317 391 SUPERFAMILY Thiolase-like 235 386 IPR016039 GO:0016746
Vivi6g03317 391 FunFam Chalcone synthase 1 236 388 - -
Vivi6g03317 391 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 4 387 IPR011141 GO:0009058|GO:0016747
Vivi6g03317 391 CDD CHS_like 16 384 - -
Vivi6g03317 391 PIRSF PKS_III 2 389 IPR011141 GO:0009058|GO:0016747
Vivi6g03317 391 SUPERFAMILY Thiolase-like 1 232 IPR016039 GO:0016746
Vivi6g03317 391 Gene3D - 236 391 IPR016039 GO:0016746
Vivi6g03317 391 Pfam Chalcone and stilbene synthases, C-terminal domain 238 388 IPR012328 -
Vivi6g03317 391 ProSitePatterns Chalcone and stilbene synthases active site. 156 172 IPR018088 GO:0009058|GO:0016746
Vivi6g03317 391 Gene3D - 1 235 IPR016039 GO:0016746
Vivi6g03317 391 FunFam Chalcone synthase 2 1 235 - -
Vivi6g03317 391 Pfam Chalcone and stilbene synthases, N-terminal domain 5 228 IPR001099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi6g03317 Vivi-Chr6 124226758 124228408 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi6g03317 163 374 Miscellaneous Gene Families AT1G04220 25.911 3.98e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi6g03317 K00660 - gmx:100775264 724.546
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vivi6g03317 6 124226758 124228408 Vivi6g03317 6 124226758 124228408 ECH