Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst1g00239 ATGGTGACCGTCGAGGAAATCCGCAACGCCCAGCGCTCCCATGGCCCCGCCACCATCCTCGCCTTTGGCACCGCCACGCCCGCCAACTGCGTCTCCCAAGCCGATTACCCTGACTACTACTTCCGCATTACCAACAGCGAACACATGACTGACCTCAAGGAGAAGTTCAAGCGCATGTGTGAAAAGTCGATGATAAAGAAGCGTTACATGCACTTGACTGAGGAGTTTCTGAAGGAGAATCCGAATATGTGTGAGTACATGGCACCGTCGCTGGACGTGAGGCAGGACATAGTGGTGGTGGAAGTGCCTAAGCTGGGAAAAGAAGCGGCAACGAAGGCGATAAAGGAGTGGGGTCAACCCAAGTCAAAGATCACGCACTTGGTGTTCTGCACCACTTCAGGCGTGGACATGCCCGGAGCGGATTACCAGCTCACAAAGCTTCTTGGTCTGAGACCCTCGGTGAAGCGCCTCATGATGTACCAGCAAGGCTGCTTCGCCGGAGGCACTGTCCTCCGCCTCGCCAAGGACCTCGCCGAGAACAACAAGGGCGCCCGCGTCCTGGTGGTCTGCTCCGAGATCACCGCCGTGACTTTCCGCGGCCCGTCTGATACCCATCTGGACTCCCTCGTGGGGCAGGCGCTGTTTGGAGATGGCGCAGCGGCGATGATCATCGGAGCGGATCCCGACAGGACTGTGGAACGGCCAATATTTGAATTGGTAACGGCTGGTCAGACAATCCTGCCAGACTCCGATGGTGCCATCGACGGCCACCTGAGAGAGGTTGGACTGACGTTCCATCTCCTAAAAGACGTGCCCGGAATCATCTCGAAGAACATCGAGAAGAGTCTGACTGAGGCGTTTGCGCCGATTGGGATTAACGACTGGAACTCGATCTTCTGGATAGCTCACCCGGGTGGACCGGCGATTCTGGACCAGGTTGAGGAGAAGCTCCGGCTGAAGCCGGAAAAACTTCGGTCCACTCGACACGTGCTGAGTGAGTACGGAAACATGTCAAGTGCATGTGTTTTGTTCATTCTTGATGAAATGAGGAAGAAGTCAAAAGAGGAAGGAAAGGGTAGCACGGGAGAAGGCCTAGAGTGGGGGGTGTTATTCGGGTTCGGGCCGGGTCTGACCGTTGAGACCGTTGTGCTTCACAGTGTTTCCCTGGAGGATTGA 1176 0.5612 MVTVEEIRNAQRSHGPATILAFGTATPANCVSQADYPDYYFRITNSEHMTDLKEKFKRMCEKSMIKKRYMHLTEEFLKENPNMCEYMAPSLDVRQDIVVVEVPKLGKEAATKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAMIIGADPDRTVERPIFELVTAGQTILPDSDGAIDGHLREVGLTFHLLKDVPGIISKNIEKSLTEAFAPIGINDWNSIFWIAHPGGPAILDQVEEKLRLKPEKLRSTRHVLSEYGNMSSACVLFILDEMRKKSKEEGKGSTGEGLEWGVLFGFGPGLTVETVVLHSVSLED 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst1g00239 391 Gene3D - 236 391 IPR016039 GO:0016746
Spst1g00239 391 FunFam Chalcone synthase 2 1 235 - -
Spst1g00239 391 FunFam Chalcone synthase 1 236 388 - -
Spst1g00239 391 SUPERFAMILY Thiolase-like 1 232 IPR016039 GO:0016746
Spst1g00239 391 SUPERFAMILY Thiolase-like 235 386 IPR016039 GO:0016746
Spst1g00239 391 Gene3D - 1 235 IPR016039 GO:0016746
Spst1g00239 391 CDD CHS_like 16 384 - -
Spst1g00239 391 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 4 387 IPR011141 GO:0009058|GO:0016747
Spst1g00239 391 PIRSF PKS_III 2 389 IPR011141 GO:0009058|GO:0016747
Spst1g00239 391 Pfam Chalcone and stilbene synthases, C-terminal domain 238 387 IPR012328 -
Spst1g00239 391 Pfam Chalcone and stilbene synthases, N-terminal domain 5 228 IPR001099 -
Spst1g00239 391 ProSitePatterns Chalcone and stilbene synthases active site. 156 172 IPR018088 GO:0009058|GO:0016746
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst1g00239 Spst-Chr1 3308925 3310658 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst1g00239 138 374 Miscellaneous Gene Families AT4G34510 23.443 9.59e-10 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst1g00239 K00660 - gmx:100775264 739.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst1g00239 1 3308925 3310658 Spst1g00239 1 3308925 3310658 ECH