Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso19g0902 ATGGTGACCGTGGAGGAAATCCGCAACGCTCAGCGTTCCCATGGACCCGCCACCATCTTGGCCTTCGGCACCGCCACGCCGTCCAACTGCGTCTCCCAAGCCGATTACCCTGACTACTACTTCCGCATTACCAACAGCGAACACATGACTGATCTCAAAGAAAAGTTCAAGCGCATGTGTGAAAAGTCCATGATAAAGAAGCGATACATGCACCTGACGGAGGAGTTTCTGAAAGAGAACCCGAACATGTGCGAGTACATGGCGCCATCGCTGGACGTGAGACAAGACGTAGTGGTGATGGAGGTGCCGAAGCTGGGAAAACAAGCCGCAACGAAAGCGATTAAGGAGTGGGGTCAACCAAAGTCAAAGATCACACACCTTGTGTTCTGCACCACTTCAGGCGTGGACATGCCCGGAGCAGATTACCAGCTCACGAAGCTTCTCGGCCTGAGGCCCTCCGTGAAGCGCCTCATGATGTATCAGCAGGGCTGCTTCGCCGGCGGCACCGTACTCCGCCTCGCGAAGGACCTCGCCGAGAACAACAAGGGTGCGAGGGTGCTCGTTGTCTGCTCCGAGATAACCGCCGTGACGTTCCGCGGCCCCTCGGACACGCACCTCGACTCGCTCGTGGGACAGGCACTGTTCGGAGACGGCGCCGCAGCGTTGATCATCGGATCAGACCCCGACCCAGCAGTGGAGCGGCCGATATTCGAGATGATATCGGCCGCCCAGACAATCCTGCCCGACTCTGACGGTGCTATAGATGGGCACCTTCGGGAGGTGGGACTCACGTTCCACCTCTTGAAAGATGTGCCCGGGATCATCTCGAAGAACATTGAGAAGAGTCTTGTTGAAGCTTTTGAGCCCGTCGGGATCAGCGACTGGAACTCTATCTTCTGGATCGCACATCCCGGTGGTCCCGCGATCCTCGATCAAGTCGAGGAGAAGCTCCGGCTCAAGCCGGAGAAACTCCAGTCCACCCGGCATGTGCTGAGTGAGTACGGAAACATGTCAAGCGCGTGTGTTTTGTTCATTCTGGATGAAATGAGGAAGAAGTCTAAGGAGGAAGGGAAGAGTACCACTGGAGAAGGGTTAGAGTGGGGGGTGCTATTCGGATTCGGGCCGGGTCTAACCGTTGAGACCGTTGTTCTTCACAGTGTTCCCTTGGAGGGATAA 1176 0.5646 MVTVEEIRNAQRSHGPATILAFGTATPSNCVSQADYPDYYFRITNSEHMTDLKEKFKRMCEKSMIKKRYMHLTEEFLKENPNMCEYMAPSLDVRQDVVVMEVPKLGKQAATKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAALIIGSDPDPAVERPIFEMISAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGIISKNIEKSLVEAFEPVGISDWNSIFWIAHPGGPAILDQVEEKLRLKPEKLQSTRHVLSEYGNMSSACVLFILDEMRKKSKEEGKSTTGEGLEWGVLFGFGPGLTVETVVLHSVPLEG* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso19g0902 391 Pfam Chalcone and stilbene synthases, N-terminal domain 5 228 IPR001099 -
Gso19g0902 391 SUPERFAMILY Thiolase-like 1 233 IPR016039 GO:0016746
Gso19g0902 391 SUPERFAMILY Thiolase-like 235 387 IPR016039 GO:0016746
Gso19g0902 391 Gene3D - 236 390 IPR016039 GO:0016746
Gso19g0902 391 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 2 389 IPR011141 GO:0009058|GO:0016747
Gso19g0902 391 PIRSF PKS_III 2 388 IPR011141 GO:0009058|GO:0016747
Gso19g0902 391 CDD CHS_like 16 384 - -
Gso19g0902 391 Gene3D - 1 235 IPR016039 GO:0016746
Gso19g0902 391 ProSitePatterns Chalcone and stilbene synthases active site. 156 172 IPR018088 GO:0009058|GO:0016746
Gso19g0902 391 Pfam Chalcone and stilbene synthases, C-terminal domain 238 388 IPR012328 -
Gso19g0902 391 PANTHER CHALCONE SYNTHASE 2 2 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso19g0902 Gso-Chr19 35477973 35480880 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso19g0902 138 374 Miscellaneous Gene Families AT4G34510 21.402 1.16e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso19g0902 K00660 - gmx:100775264 786.178