LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco2g00911	ATGTGGCTCCAAATCTACCGCAGGTTAAACTGCCTACCCTTTATCCACGTGTCTCTTCATCTGCCCGTCCCTCAAACCTACTCGCCCCCTTCATCGCCCTCTGACAATGTCCCCTTGTATATCTACCCACCCTCCATTCCCAAACAACCTCACTCACCTTTCATCCTTCTCTCTTTCGCTCACTCTTTTCTAACTACTTCCTCTCCTTTTCTCTTACGTCCACACCTCCAGATGGTGACAGTCGAGGAAATCCGCAACGCCCAGCGCTCCCATGGCCCCGCCACCATCCTCGCCTTCGGCACTGCCACGCCCTCCAACTGTATCTCCCAAGCGGATTACCCTGACTACTACTTCCGCATTACCAACAGCGAACACATGACCGACCTGAAGGAGAAGTTCAAGCGCATGTGTGAAAAGTCGATGATAAAGAAGCGTTACATGCACCTGACGGAGGAGTTTCTGAAGGAGAATCCAAACATGTGTGCGTACATGGCGCCGTCGCTGGACGCGAGGCAGGACATAGTGGTGGTGGAAGTGCCGAAGCTGGGAAAAGAAGCAGCGAGGAAGGCAATAAAGGAGTGGGGTCAACCCAAGTCAAAGATCACACACCTGGTGTTCTGCACCACTTCAGGTGTGGACATGCCCGGAGCCGATTACCAGCTTACCAAGCTTCTCGGGCTGAGGCCCTCCGTGAAGCGTCTCATGATGTACCAGCAGGGCTGCTTCGCCGGCGGCACCGTCCTCCGCCTCGCCAAGGACCTTGCCGAGAACAACAAGGGCGCCCGCGTTCTCGTAGTCTGCTCCGAAATCACCGCCGTGACGTTCCGCGGCCCGTCCGATGCCCACCTTGACTCCCTCGTCGGTCAGGCACTGTTCGGGGACGGCGCTGCCGCGATGATCATTGGAGCGGATCCTGACAGGACTGTAGAACGGCCTATATTTGAATTGGTATCGGCCGCCCAGACCATTCTGCCGGACTCTGATGGTGCCATCGACGGGCACTTAAGGGAGGTGGGACTAACGTTCCATCTTCTAAAAGACGTGCCCGGAATCATCTCGAAGAACATTGAGAAGAGTCTGACAGAGGCGTTTGCGCCGATTGGGATTAAAGACTGGAACTCGATCTTCTGGGTGGCACACCCGGGTGGACCAGCGATTCTGGACCAGGTTGAGGAGAAGCTACGGCTGAAACCGGAGAAACTCCGGTCCACCCGGCACGTGCTGAGCGAGTATGGAAACATGTCAAGTGCATGTGTTTTGTTCATTCTTGATGAAATGAGGAAGAAGTCGAAGGAGGAAGAGAAGGGTAGCACAGGAGAAGGGCTAGAGTGGGGGGTGTTATTCGGGTTCGGACCGGGTCTAACCGTTGAGACGGTTGTGCTGCACAGCGTTCCCTTGGAGGGGTGA	1407	0.5558	MWLQIYRRLNCLPFIHVSLHLPVPQTYSPPSSPSDNVPLYIYPPSIPKQPHSPFILLSFAHSFLTTSSPFLLRPHLQMVTVEEIRNAQRSHGPATILAFGTATPSNCISQADYPDYYFRITNSEHMTDLKEKFKRMCEKSMIKKRYMHLTEEFLKENPNMCAYMAPSLDARQDIVVVEVPKLGKEAARKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDAHLDSLVGQALFGDGAAAMIIGADPDRTVERPIFELVSAAQTILPDSDGAIDGHLREVGLTFHLLKDVPGIISKNIEKSLTEAFAPIGIKDWNSIFWVAHPGGPAILDQVEEKLRLKPEKLRSTRHVLSEYGNMSSACVLFILDEMRKKSKEEEKGSTGEGLEWGVLFGFGPGLTVETVVLHSVPLEG	468

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco2g00911	468	Pfam	Chalcone and stilbene synthases, C-terminal domain	315	465	IPR012328	-
	Phco2g00911	468	SUPERFAMILY	Thiolase-like	312	464	IPR016039	GO:0016746
	Phco2g00911	468	ProSitePatterns	Chalcone and stilbene synthases active site.	233	249	IPR018088	GO:0009058\|GO:0016746
	Phco2g00911	468	Gene3D	-	72	312	IPR016039	GO:0016746
	Phco2g00911	468	FunFam	Chalcone synthase 2	77	312	-	-
	Phco2g00911	468	FunFam	Chalcone synthase 1	313	465	-	-
	Phco2g00911	468	PANTHER	HYDROXYMETHYLGLUTARYL-COA SYNTHASE	81	464	IPR011141	GO:0009058\|GO:0016747
	Phco2g00911	468	SUPERFAMILY	Thiolase-like	78	309	IPR016039	GO:0016746
	Phco2g00911	468	Gene3D	-	313	467	IPR016039	GO:0016746
	Phco2g00911	468	CDD	CHS_like	93	461	-	-
	Phco2g00911	468	Pfam	Chalcone and stilbene synthases, N-terminal domain	82	305	IPR001099	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco2g00911	Phco-Chr2	11251487	11253524	Dispersed

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Phco2g00911	2	11251487	11253524	Phco2g00911	2	11251487	11253524	ECH