Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo5g02100 ATGTGTGAAAAGTCCATGATAAAGAAGCGATACATGCACCTGACGGAGGAGTTTCTGAAGGAGAATCCGAACATGTGCGAGTACATGGCGCCGTCGCTGGACGTGAGGCAGGACATAGTGGTGGCGGAGGTGCCGAAGCTGGGAAAGCAAGCCGCAGCGAAAGCCATTAAGGAGTGGGGTCAACCAAAGTCAAAGATCACGCACCTCGTGTTCTGCACCACTTCAGGGGTGGACATGCCCGGAGCAGATTACCAACTCACGAAGCTTCTGGGCCTGAGGCCCTCCGTGAAGCGCCTCATGATGTACCAGCAGGGCTGCTTCGCCGGCGGCACAGTGCTGCGCCTCGCGAAGGACCTCGCCGAGAACAACAAGGGCGCGAGGGTGCTCGTGGTCTGCTCCGAGATCACCGCCGTGACGTTCCGTGGCCCCTCGGACACCCACCTCGACTCTCTCGTCGGGCAGGCACTCTTCGGAGACGGCGCCGCGGCGATGATCATCGGAGCAGACCCCGACACGGCAGTCGAGCGGCCGATATTCGAAATGGTATCGGCCGCTCAGACAATCCTGCCAGACTCGGAAGGTGCCATCGATGGACACCTTCGGGAGGTGGGACTCACGTTCCACCTCCTGAAGGACGTGCCCGGGATCATCTCCAAGAACATCGAGAAAAGTCTTGTGGAAGCTTTTGGGCCGATTGGGATCAGCGACTGGAACTCCATCTTCTGGATAGCGCACCCGGGTGGACCGGCGATTCTGGACCAGGTCGAGGAGAAGCTCCGGCTCAAGCCGGAGAAGCTCCGGTCCACCCGGCACGTGCTGAGCGAGTACGGAAACATGTCAAGCGCGTGCGTTTTGTTCATTCTGGATGAGCTGAGGAAGAAGTCGAAGGAGGAAGGGAAGGGTACCACTGGCGAAGGGTTAGAGTGGGGGGTGCTATTCGGGTTCGGGCCGGGTCTTACCGTTGAGACCGTTGTGCTGCACAGCGTTCCGTTGGAGTGA 999 0.5966 MCEKSMIKKRYMHLTEEFLKENPNMCEYMAPSLDVRQDIVVAEVPKLGKQAAAKAIKEWGQPKSKITHLVFCTTSGVDMPGADYQLTKLLGLRPSVKRLMMYQQGCFAGGTVLRLAKDLAENNKGARVLVVCSEITAVTFRGPSDTHLDSLVGQALFGDGAAAMIIGADPDTAVERPIFEMVSAAQTILPDSEGAIDGHLREVGLTFHLLKDVPGIISKNIEKSLVEAFGPIGISDWNSIFWIAHPGGPAILDQVEEKLRLKPEKLRSTRHVLSEYGNMSSACVLFILDELRKKSKEEGKGTTGEGLEWGVLFGFGPGLTVETVVLHSVPLE 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo5g02100 332 CDD CHS_like 1 326 - -
Pumo5g02100 332 FunFam Chalcone synthase 1 178 330 - -
Pumo5g02100 332 SUPERFAMILY Thiolase-like 1 174 IPR016039 GO:0016746
Pumo5g02100 332 SUPERFAMILY Thiolase-like 177 329 IPR016039 GO:0016746
Pumo5g02100 332 Pfam Chalcone and stilbene synthases, N-terminal domain 1 170 IPR001099 -
Pumo5g02100 332 ProSitePatterns Chalcone and stilbene synthases active site. 98 114 IPR018088 GO:0009058|GO:0016746
Pumo5g02100 332 FunFam Chalcone synthase 2 1 177 - -
Pumo5g02100 332 Gene3D - 1 177 IPR016039 GO:0016746
Pumo5g02100 332 PANTHER HYDROXYMETHYLGLUTARYL-COA SYNTHASE 1 329 IPR011141 GO:0009058|GO:0016747
Pumo5g02100 332 Gene3D - 178 332 IPR016039 GO:0016746
Pumo5g02100 332 PIRSF PKS_III 1 330 IPR011141 GO:0009058|GO:0016747
Pumo5g02100 332 Pfam Chalcone and stilbene synthases, C-terminal domain 180 330 IPR012328 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo5g02100 Pumo-Chr5 57454169 57456286 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo5g02100 80 316 Miscellaneous Gene Families AT4G34510 23.162 2.34e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo5g02100 K00660 - gmx:100775264 626.706
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo5g02100 5 57454169 57456286 Pumo5g02100 5 57454169 57456286 ECH