Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu9g2648 . . Adu04g00861 . Aev04g1084 Ahy14g0944 Ahy4g0851 Aip04g01032 . Amo14g1348 Amo04g0021 Apr1g2076 Arst4g01276 . . Bva06g00292 Car01g00945 Cca08g01752 . . . . Gma15g01330 Gma09g00335 Gso15g1185 Gso9g0318 . . . Lan4g0631 . . . Lasa1g01477 . . . . . . Mepo6g01388 . . Mtr2g1221 . . . . Pste2g03060 Pumo2g01297 Rops11g01475 . . Ssu1g1244 . Tpr5g2809 Trre3g01604 Tsu07g01746 Vian4g00064 Vifa1g09486 Vimu10g00107 Viun9g00080 Vivi4g02877 Vra5g0068
Pvu9g2649 . . Adu04g00860 . Aev04g1083 Ahy14g0942 Ahy4g0848 Aip04g01031 . Amo14g1347 . . Arst4g01274 Bach2g01262 . Bva06g00293 . . . . . . Gma15g01329 Gma09g00334 . Gso9g0317 . . . Lan4g0630 . Lan19g0828 Lapu6g01459 Lasa1g01476 . . . . Lja6g2311 Mal4g3768 Mepo6g01387 Mesa5g03252 . Mtr2g1220 . . . . Pste2g03052 . . . . . . . . . . . Vimu10g00106 . Vivi4g02879 Vra5g0067
Pvu9g2650 . . Adu04g00859 . Aev04g1080 . . Aip04g01030 . . Amo04g0024 Apr1g2075 . . . . Car01g00943 Cca08g01753 . Dod03g1227 . . . Gma09g00333 . Gso9g0316 . . . . . . . Lasa1g01475 . . . . Lja6g2312 Mal4g3770 . . . . . Phco7g03023 . . Pste2g03048 Pumo2g01291 . Seca6g04077 . . . Tpr5g1127 . . Vian4g00062 Vifa1g09488 . Viun9g00077 Vivi4g02881 .
Pvu9g2651 . . . . Aev04g1078 Ahy14g0940 . . . Amo14g1345 . . Arst4g01272 . . . . . . Dod03g1226 . . . . . . . . . . . . . Lasa1g01473 . . . . . Mal4g3777 Mepo6g01384 . . Mtr2g1218 . . . . . . . . . . . . Trre3g01603 . . . . . . .
Pvu9g2652 . . . . . . . . . . . . . . . . . . . Dod03g1225 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu10g00103 . . Vra5g0064
Pvu9g2653 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g03025 . . . . . . . . . . . . . . . . . .
Pvu9g2654 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr5g2802 . Tsu08g00840 . . . . . Vra5g0062
Pvu9g2655 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g03027 . . . . . . . . . . . . . . Vimu10g00095 . . Vra5g0061
Pvu9g2656 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g03028 . . . . . . . . . . . . . . Vimu10g00094 . . Vra5g0060
Pvu9g2657 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu10g00093 . . Vra5g0059
   
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Select Species Gene Chromosome Start End Strand
Lasa Lasa1g01476 Chr1 127292800 127294083 -
Lapu Lapu6g01459 Chr6 14383626 14386195 +
Pvu Pvu9g2648 Chr9 36945560 36948126 +
Adu Adu04g00861 Chr04 13355660 13356521 +
Aev Aev04g1084 Chr04 6772751 6773680 +
Ahy Ahy14g0944 Chr14 15558909 15563662 +
Ahy Ahy4g0851 Chr4 14123135 14126110 +
Aip Aip04g01032 Chr04 14778520 14808799 +
Amo Amo14g1348 Chr14 22186552 22191209 +
Amo Amo04g0021 Chr04 273285 275159 -
Apr Apr1g2076 Chr1 30290634 30292984 +
Arst Arst4g01276 Chr4 13409745 13412863 +
Bva Bva06g00292 Chr06 4424997 4426413 -
Car Car01g00945 Chr01 8782890 8786288 +
Cca Cca08g01752 Chr08 49487054 49522160 -
Gma Gma15g01330 Chr15 11791078 11792416 +
Gma Gma09g00335 Chr09 3132518 3134407 +
Gso Gso15g1185 Chr15 11722623 11724685 +
Gso Gso9g0318 Chr9 3050348 3052449 +
Lan Lan4g0631 Chr4 8682848 8684913 +
Lasa Lasa1g01477 Chr1 127537847 127540315 +
Mepo Mepo6g01388 Chr6 15027779 15031006 +
Mtr Mtr2g1221 Chr2 13230850 13233488 +
Pste Pste2g03060 Chr2 30587601 30590055 +
Pumo Pumo2g01297 Chr2 19073182 19076132 +
Rops Rops11g01475 Chr11 22248573 22250350 +
Ssu Ssu1g1244 Chr1 27536545 27538028 +
Tpr Tpr5g2809 Chr5 51079027 51082092 +
Trre Trre3g01604 Chr3 12720708 12723406 +
Tsu Tsu07g01746 Chr07 17170948 17173960 +
Vian Vian4g00064 Chr4 573054 592209 +
Vifa Vifa1g09486 Chr1 1507489391 1507491206 -
Vimu Vimu10g00107 Chr10 592889 594148 +
Viun Viun9g00080 Chr9 479670 482553 +
Vivi Vivi4g02877 Chr4 135034539 135037313 -
Vra Vra5g0068 Chr5 517174 518673 +
Pvu Pvu9g2649 Chr9 36951700 36952566 +
Adu Adu04g00860 Chr04 13347113 13349640 -
Aev Aev04g1083 Chr04 6764298 6765865 -
Ahy Ahy14g0942 Chr14 15523142 15526057 +
Ahy Ahy4g0848 Chr4 14021003 14023645 +
Aip Aip04g01031 Chr04 14770773 14773947 -
Amo Amo14g1347 Chr14 22150760 22153548 +
Arst Arst4g01274 Chr4 13316745 13319020 +
Bach Bach2g01262 Chr2 22083518 22084897 +
Bva Bva06g00293 Chr06 4429626 4431573 +
Gma Gma15g01329 Chr15 11785345 11787450 +
Gma Gma09g00334 Chr09 3123301 3125723 +
Gso Gso9g0317 Chr9 3037494 3044267 +
Lan Lan4g0630 Chr4 8676212 8678278 +
Lan Lan19g0828 Chr19 14749620 14751465 -
Lapu Lapu6g01459 Chr6 14383626 14386195 +
Lasa Lasa1g01476 Chr1 127292800 127294083 -
Lja Lja6g2311 Chr6 52051627 52053735 -
Mal Mal4g3768 Chr4 110592595 110595794 -
Mepo Mepo6g01387 Chr6 15020340 15022116 -
Mesa Mesa5g03252 Chr5 58316351 58317388 +
Mtr Mtr2g1220 Chr2 13224001 13225692 -
Pste Pste2g03052 Chr2 30522380 30524103 -
Vimu Vimu10g00106 Chr10 584029 586223 -
Vivi Vivi4g02879 Chr4 135065319 135066741 +
Vra Vra5g0067 Chr5 507603 510031 -
Pvu Pvu9g2650 Chr9 36957585 36958463 -
Adu Adu04g00859 Chr04 13343998 13345430 +
Aev Aev04g1080 Chr04 6753919 6754767 +
Aip Aip04g01030 Chr04 14766682 14768123 +
Amo Amo04g0024 Chr04 359439 360767 -
Apr Apr1g2075 Chr1 30280596 30281591 +
Car Car01g00943 Chr01 8755307 8756950 +
Cca Cca08g01753 Chr08 49583925 49585135 -
Dod Dod03g1227 Chr03 15539255 15542555 +
Gma Gma09g00333 Chr09 3112217 3113447 +
Gso Gso9g0316 Chr9 3031242 3032560 +
Lasa Lasa1g01475 Chr1 126984446 126985555 +
Lja Lja6g2312 Chr6 52080167 52081199 -
Mal Mal4g3770 Chr4 110644721 110645296 -
Phco Phco7g03023 Chr7 48879270 48880148 -
Pste Pste2g03048 Chr2 30479606 30481894 -
Pumo Pumo2g01291 Chr2 18682145 18682764 +
Seca Seca6g04077 Chr6 108508821 108509762 -
Tpr Tpr5g1127 Chr5 22567261 22567946 -
Vian Vian4g00062 Chr4 543632 545742 +
Vifa Vifa1g09488 Chr1 1508227016 1508227828 -
Viun Viun9g00077 Chr9 457796 458888 +
Vivi Vivi4g02881 Chr4 135118869 135120399 -
Pvu Pvu9g2651 Chr9 36963343 36964179 -
Aev Aev04g1078 Chr04 6746919 6747860 -
Ahy Ahy14g0940 Chr14 15510134 15511682 +
Amo Amo14g1345 Chr14 22137824 22139387 +
Arst Arst4g01272 Chr4 13306559 13307831 +
Dod Dod03g1226 Chr03 15515419 15516489 +
Lasa Lasa1g01473 Chr1 126493484 126494359 -
Mal Mal4g3777 Chr4 110794680 110795522 +
Mepo Mepo6g01384 Chr6 15001847 15003082 -
Mtr Mtr2g1218 Chr2 13209366 13210549 -
Trre Trre3g01603 Chr3 12710287 12711111 +
Pvu Pvu9g2652 Chr9 36969916 36970785 -
Dod Dod03g1225 Chr03 15502340 15505769 +
Vimu Vimu10g00103 Chr10 571278 572174 +
Vra Vra5g0064 Chr5 495578 496652 +
Pvu Pvu9g2653 Chr9 36980258 36980903 +
Phco Phco7g03025 Chr7 48891166 48891468 +
Pvu Pvu9g2654 Chr9 36987248 36994102 +
Tpr Tpr5g2802 Chr5 50797222 50803688 +
Tsu Tsu08g00840 Chr08 9132853 9136776 -
Vra Vra5g0062 Chr5 481131 485312 -
Pvu Pvu9g2655 Chr9 36999072 37000933 +
Phco Phco7g03027 Chr7 48906633 48908204 +
Vimu Vimu10g00095 Chr10 543803 545374 -
Vra Vra5g0061 Chr5 471894 473808 -
Pvu Pvu9g2656 Chr9 37004510 37006853 +
Phco Phco7g03028 Chr7 48911653 48912078 +
Vimu Vimu10g00094 Chr10 542532 542954 -
Vra Vra5g0060 Chr5 469673 470564 -
Pvu Pvu9g2657 Chr9 37007108 37013305 -
Vimu Vimu10g00093 Chr10 535429 540838 +
Vra Vra5g0059 Chr5 462740 468478 +