Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00107 ATGTCTTCTCTCTTCTCCATTACCAAGATGTTCTCATTGTCCACTCTCATGCTTCTTCTCCAACTGTTCACCATAAACCTTCGCCATGCAGATGCTCAAATTGGCGTATGTTATGGCACAATGGGCGACAATTTACCTCCGGCAAGTGAAGTTGTAAGCCTTTACGTATCAAACAGTATAACAAGAATGAGAATCTATTATACTAATCAAGATGCTTTGAATGCACTTCGAAATTCAAACATTGAGCTCATTCTTGGCGTAGCCAACCCCGACCTTCAAGCGCTTGCAAGCAGCTCCGACAATGCTATTCAGTGGGTGCAAAACAATGTATTGAACTACTTCCCTTATGTCAAAATCAAGTACGTGGCAGTCGGCAACGAAGTGAATCCCGTTGGAGCAAACTCTCAGTATGCGCAGTATGTTCTGCCTGCAATCCAAAACATATACCAAGCTATTAGGGCTCAAGGTCTTCAAGATCAAATTAAGGTTACAACAGCCATTGACATGAGCATGTTAGGAAACTCTTACCCTCCATCACAAGGCTCCTTTAGAGCTGATGTGAGGTCATACATAGACCCCATAATCGGCTACTTGGTATATGCAAATGCACCTTTACTAGCAAATGTCTACCCTTATTTCAGCTACGCTAATAACCCTACTGACATATCACTTTCTTATGCTCTTTTCACCTCAGCAACTGTTGTGGTATGGGATGGTCCATATGGCTACAAAAATTTGTTTGATGCTATGTTGGATGCATTGCATGCTGCAATTGATAACACTGGAATTGGTTATGTTGAGGTTGTCGTGTCGGAGAGTGGATGGCCGTCAGATGGAGGGTTTGGCGCCACTTACGACAACGCAAACACCTACTTAGGTAATTTGATTCTTCGTGCTAAAACAGGTACTCCTAGAAGGCCTTCGAAACCTACAGAAATCTATATTTTTGCTATGTTCGATGAGAATCAAAAGAGTCCTGAAATAGAGAAACATTTTGGACTCTTCTTCCCTAACAAGCAAAAGAAATATACATTTGGATTCACTGCATAA 1050 0.4171 MSSLFSITKMFSLSTLMLLLQLFTINLRHADAQIGVCYGTMGDNLPPASEVVSLYVSNSITRMRIYYTNQDALNALRNSNIELILGVANPDLQALASSSDNAIQWVQNNVLNYFPYVKIKYVAVGNEVNPVGANSQYAQYVLPAIQNIYQAIRAQGLQDQIKVTTAIDMSMLGNSYPPSQGSFRADVRSYIDPIIGYLVYANAPLLANVYPYFSYANNPTDISLSYALFTSATVVVWDGPYGYKNLFDAMLDALHAAIDNTGIGYVEVVVSESGWPSDGGFGATYDNANTYLGNLILRAKTGTPRRPSKPTEIYIFAMFDENQKSPEIEKHFGLFFPNKQKKYTFGFTA 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00107 349 Gene3D Glycosidases 33 348 - -
Vimu10g00107 349 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 21 344 IPR044965 GO:0004553|GO:0005975
Vimu10g00107 349 SUPERFAMILY (Trans)glycosidases 34 345 IPR017853 -
Vimu10g00107 349 FunFam glucan endo-1,3-beta-glucosidase, basic 34 347 - -
Vimu10g00107 349 Pfam Glycosyl hydrolases family 17 34 346 IPR000490 GO:0004553|GO:0005975
Vimu10g00107 349 ProSitePatterns Glycosyl hydrolases family 17 signature. 266 279 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00107 Vimu-Chr10 592889 594148 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00107 41 349 Glycoside Hydrolase AT4G16260 59.486 2.21e-134 384
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00107 - - ccaj:109791097 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu10g00107 10 592889 594148 Vimu10g00107 10 592889 594148 ECH