Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre3g01604 ATGGCTTCTTTCTTTGCTAGAACCAAGAGGTTCTCTTTGGCCTCTCCACTGTTTCTATTGGGATTATTCACAATAAACCTTATTCCTATGGCAGATGCTCAAATAGGTGTATGTTATGGTATGATGGGAAACAATTTACCACCAGCAAATGAAGTTATAGATCTCTACAAAGCAAATAACATCAAGAGAATGAGACTTTATGATCCAAATCAAAATGCTCTAAATGCATTAAGAAATTCAGGCATTGAAGTCATGCTTGGTGTGCCAAATTCTGACCTTCAAAGCTTAGCCACAAATGCTGATAATGCACGTCAATGGGTACAAAGAAATGTGTTGAATTTCTGGCCTAGTGTCAAATTCAAGCTTATTGCAGTTGGTAATGAAGTAAGTCCAGTTGGAGGCTCTTCTGGGCTGGCCCAATATGTTTTACCTGCCACCCAAAACGTATACCAAGCAATAAGAGCACAAGGTCTTCAAGATCAAATCAAGGTTTCAACCGCTATTGACACGACGCTTATCGGAACCTCTTTCCCACCGTCTAAAGGTTCTTTCAGGGGTGACGTGAGGTCGTACCTAGACCCTATAATTGGGTACTTGGTATATGCAGGTGCACCGTTACTTGTTAATCTTTATCCTTATTTTAGCTATGCAGGTAACCCGCGTGACATATCACTTCCTTATGCTCTTTTCACCTCCCCGAATGTTATGGTACAAGATGGTCAATATGGGTACCAAAATTTGTTTGATGCTATGTTGGATTCAGTGTTTGCAGCCTTAGATAACACCGGAATTGGTTGGGTGAATATTGTTGTATCTGAGAGTGGTTGGCCCTCAGATGGAGGGGTTGGTACTTCATATGATAATGCACGTATTTACCTTGATAATTTGATTCGTCATGTTGGTAAGGGTACTCCGAGAAGGCCTTGGGCTGTAGACACTTATATTTTTGCTATGTTTGATGAGAATCAAAAGAGTCCTGAATTGGAGAAACATTTTGGAGTGTTTTATCCCAATAAACAAAAGAAGTATCCGTTTGGATTTGGAGGAGAAAGAAGAAATGGGGAAATTGTGGATGGTGACTTCAATGCAACAACTTCTCTTAAGAGTGATATGTAA 1116 0.4005 MASFFARTKRFSLASPLFLLGLFTINLIPMADAQIGVCYGMMGNNLPPANEVIDLYKANNIKRMRLYDPNQNALNALRNSGIEVMLGVPNSDLQSLATNADNARQWVQRNVLNFWPSVKFKLIAVGNEVSPVGGSSGLAQYVLPATQNVYQAIRAQGLQDQIKVSTAIDTTLIGTSFPPSKGSFRGDVRSYLDPIIGYLVYAGAPLLVNLYPYFSYAGNPRDISLPYALFTSPNVMVQDGQYGYQNLFDAMLDSVFAALDNTGIGWVNIVVSESGWPSDGGVGTSYDNARIYLDNLIRHVGKGTPRRPWAVDTYIFAMFDENQKSPELEKHFGVFYPNKQKKYPFGFGGERRNGEIVDGDFNATTSLKSDM 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre3g01604 371 Gene3D Glycosidases 34 348 - -
Trre3g01604 371 ProSitePatterns Glycosyl hydrolases family 17 signature. 267 280 IPR000490 GO:0004553|GO:0005975
Trre3g01604 371 Pfam Glycosyl hydrolases family 17 35 345 IPR000490 GO:0004553|GO:0005975
Trre3g01604 371 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 24 347 IPR044965 GO:0004553|GO:0005975
Trre3g01604 371 FunFam glucan endo-1,3-beta-glucosidase, basic 35 347 - -
Trre3g01604 371 SUPERFAMILY (Trans)glycosidases 35 346 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre3g01604 Trre-Chr3 12720708 12723406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre3g01604 41 351 Glycoside Hydrolase AT4G16260 63.057 8.48e-140 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre3g01604 - - tpra:123885520 695.271
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre3g01604 3 12720708 12723406 Trre3g01604 3 12720708 12723406 ECH