Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00106 ATGGCCTCTCACTTCTCCAGAAACCAGAGGTTCTCATTTGCTGCTTTGCTTCTTCTTTTTGAACTATTCGCAGTAAACCTTATTACAGCAGATGCTCAAATTGGTGTGTGTTACGGCATGATGGGCAACAATCTACCAGCAGCTAATGAAGTTATAAGTCTTTACAGATCAAACAACATAAGAAGAATGAGACTTTACGATCCCAATCAAGCTGCTCTACAAGCCCTAAGAAATTCAGGCATTGAACTCATTCTTGGAGTGCCAAATTCTGATCTTCAGGGTCTTGCCACAAATGCTGATAATGCTCGTCAATGGGTGCAAAGGAACGTCCTGAACTTTTGGCCAAGTGTCAGAATCAAGTACATAGCAGTTGGAAACGAAGTGAGTCCTGTTGGAGGGTCCTCTTGGTATGCACAGTTTGTTCTACCTGCTGTCCAAAATGTATACCAAGCTATAAGGGCACAAGGTCTTCATGATCAAATCAAGGTTTCAACAGCCATTGACATGACCCTAATAGGAAACTCCTACCCCCCATCACAGGGTTCCTTCAGGGGTGATGTTAGATCATACTTAGACCCTATAATAGGGTACCTGCTATATGCAGGTGCACCTTTACTGGTCAATGTGTACCCTTATTTTTCTTACTACGGTAATCCTCGTGACATATCACTTCCTTATGCTCTTTTCACTGCACCGAATGTTCAGGTGTGGGATGGCCAATATGGGTACCAGAATTTGTTTGATGCTATGTTGGATTCAGTGCATGCAGCCATTGATAATACTAGGATTGGTTATGTTGAGGTTGTTGTGTCTGAGAGCGGGTGGCCCTCGGATGGAGATTTTGGTGCCTCGTACGACAACGCACGTGTGTACTTGGATAATTTGGTTCGTCGTGCTGGTAGAGGAAGCCCTAGAAGGCCTTCAAAACCCACAGAAATTTATATCTTTGCCATGTTCGATGAGAATGGAAAGAGTCCAGAGATAGAGAAACATTTTGGACTCTTTAGTCCCAACAAACAAAAGAAATACCCCTTTGGATTTGGTGGTAAAATTGTTATGGATGACTTCAATGCAACAAATCCCCTTAAGAGTGACATGTAA 1101 0.4287 MASHFSRNQRFSFAALLLLFELFAVNLITADAQIGVCYGMMGNNLPAANEVISLYRSNNIRRMRLYDPNQAALQALRNSGIELILGVPNSDLQGLATNADNARQWVQRNVLNFWPSVRIKYIAVGNEVSPVGGSSWYAQFVLPAVQNVYQAIRAQGLHDQIKVSTAIDMTLIGNSYPPSQGSFRGDVRSYLDPIIGYLLYAGAPLLVNVYPYFSYYGNPRDISLPYALFTAPNVQVWDGQYGYQNLFDAMLDSVHAAIDNTRIGYVEVVVSESGWPSDGDFGASYDNARVYLDNLVRRAGRGSPRRPSKPTEIYIFAMFDENGKSPEIEKHFGLFSPNKQKKYPFGFGGKIVMDDFNATNPLKSDM 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00106 366 SUPERFAMILY (Trans)glycosidases 34 346 IPR017853 -
Vimu10g00106 366 FunFam glucan endo-1,3-beta-glucosidase, basic 34 347 - -
Vimu10g00106 366 Pfam Glycosyl hydrolases family 17 34 345 IPR000490 GO:0004553|GO:0005975
Vimu10g00106 366 Gene3D Glycosidases 33 348 - -
Vimu10g00106 366 ProSitePatterns Glycosyl hydrolases family 17 signature. 266 279 IPR000490 GO:0004553|GO:0005975
Vimu10g00106 366 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 20 347 IPR044965 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00106 Vimu-Chr10 584029 586223 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00106 40 347 Glycoside Hydrolase AT4G16260 63.871 6.93e-142 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00106 - - ccaj:109791097 656.751