Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu10g00095 ATGGGTGGTGATAGCATAGACATGGACAGGGAGAGATTGACGGCAGAGATGGACTTCAAGGACTCGTCTTCCGCCGTCATCAGAATCCGCCGCCGCCTCCCGGACTTCCTTCAGTCGGTCAAGTTAAAGTACGTGAAGTTGGGATTGGGATACGGTTACTCATGCAACGCAGCCAGCATTGTGATGTTGGCCGTCACCCTTCCTCTCTGCTTATCCCTCACTGGTCTCAAACTCTCCAAACTCTGCTCCCACCAGCTCGACGCCGAGACCGTGCTGGCGGCTTCCGCTGCGCTCCTTTCCCTCGCCGCTTTCCACCGCTGGAAGCGATTGGGAGCGGTGTATCTAGTGGACTTCGCGTGCTACAAGCCGGAGAAGGAACGGAAAATCTCGGTGGAGTCCTTCCTGAAAATGAACGAAGAGACTGGGGGATTCGAGGAAGAGTCTCTTCAATTCCAAAGGAAGGTTTCGACAAGATCGGGTCTTGGCGACGAGACTTACCTTCCCAGAGGAATCACTTCCCGCCCGCCCAATCTCTGCATGAGCGAGGCGCGCTTGGAGGCAGAACAGGTGATGTTCGGCGCGTTGGATGCGCTTTTCGCCAAAACGGGCGTGGAGCCGAAGGACATTGACATCCTGGTGGTGAATTGTAGTTTGTTTAACCCCACCCCTTCTCTCTCCGCCATGATTGTGAACCACTACAAGCTCAGGAGCAACATCAAGAGCTACAACCTGGGAGGCATGGGATGCAGTGCCGGACTCATTTCCGTTGACCTGGCCAAGGACCTTCTCAAAGCCAACCCGAACTCCTACGCCCTGGTGCTCAGCACGGAGAACATAACCCTCAATTGGTACTTCGGCAACGACCGCTCCATGCTCCTCTGCAACTGCATTTTCCGAATGGGCGGCGCCGCCGTCCTCCTCTCCAACAAGCCTTCCGATCGGTCGCGATCTAAGTACCAGCTGCTCCACACCGTCAGAACCCACAAGGGCGCCGACGACAAGAACTACAACTGCGTCTATCAGAAAGAGGACGATACCGGAAAAGTGGGGGTGTGTTTAGCGCGGGAGCTAATGGCTGTGGCGGGGGATGCTCTGAAGACAAACATCACAACCTTGGGTCCGATGGTTCTGCCTTACTCGGAGCAGTTGATGTTTTTCCTGTCACTGGTTCGGAGAAAGGTGTTGAAGATGTCGAGGGTGAAGCCGTACATTCCGGACTTCAAGCTGGCCTTCGAGCACTTCTGCATCCACGCCGGCGGAAGGGCGGTGTTGGATGAGTTGCAGAAGAATCTCCAGCTGAGCGAGTGGCACATGGAGCCCTCGAGAATGACGCTCCACCGCTTCGGCAACACCTCCAGCAGCTCCCTCTGGTACGAGCTTGCGTACACGGAAGCCAAGGGTCGGGTCGGCAAGGGGGACCGCGTCTGGCAGATCGCATTCGGGTCGGGTTTCAAGTGCAACAGCGCCGTCTGGAAGGCCATGCGTGACATGCCGAACTTAACTGAATGGCGTGGCAACCCCTGGGACGATTCCGTCCACAACTATCCCGTTAATCTTTCCTCTACTTCTTAA 1572 0.5611 MGGDSIDMDRERLTAEMDFKDSSSAVIRIRRRLPDFLQSVKLKYVKLGLGYGYSCNAASIVMLAVTLPLCLSLTGLKLSKLCSHQLDAETVLAASAALLSLAAFHRWKRLGAVYLVDFACYKPEKERKISVESFLKMNEETGGFEEESLQFQRKVSTRSGLGDETYLPRGITSRPPNLCMSEARLEAEQVMFGALDALFAKTGVEPKDIDILVVNCSLFNPTPSLSAMIVNHYKLRSNIKSYNLGGMGCSAGLISVDLAKDLLKANPNSYALVLSTENITLNWYFGNDRSMLLCNCIFRMGGAAVLLSNKPSDRSRSKYQLLHTVRTHKGADDKNYNCVYQKEDDTGKVGVCLARELMAVAGDALKTNITTLGPMVLPYSEQLMFFLSLVRRKVLKMSRVKPYIPDFKLAFEHFCIHAGGRAVLDELQKNLQLSEWHMEPSRMTLHRFGNTSSSSLWYELAYTEAKGRVGKGDRVWQIAFGSGFKCNSAVWKAMRDMPNLTEWRGNPWDDSVHNYPVNLSSTS 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu10g00095 523 SUPERFAMILY Thiolase-like 321 494 IPR016039 GO:0016746
Vimu10g00095 523 FunFam 3-ketoacyl-CoA synthase 123 493 - -
Vimu10g00095 523 SUPERFAMILY Thiolase-like 108 316 IPR016039 GO:0016746
Vimu10g00095 523 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 412 492 IPR013747 -
Vimu10g00095 523 PIRSF Very_long_ch_3-ktacl-CoA_syn 35 523 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vimu10g00095 523 PANTHER 3-KETOACYL-COA SYNTHASE 95 517 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vimu10g00095 523 Gene3D - 117 493 IPR016039 GO:0016746
Vimu10g00095 523 Pfam FAE1/Type III polyketide synthase-like protein 108 394 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vimu10g00095 523 CDD CHS_like 114 491 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu10g00095 Vimu-Chr10 543803 545374 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu10g00095 4 519 Acyl Lipid Metabolism Gene Families AT1G01120 71.863 0.0 777
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu10g00095 K15397 - gmx:100790385 945.266