Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0061 ATGGGTGGCGATAGCATAGACATGGACAGGGAGAGATTGACGGCGGAGATGGACTTCAAGGACTCGTCTTCCGCCGTCATCAGAATCCGCCGCCGCCTCCCAGACTTCCTTCAGTCGGTCAAGTTAAAGTACGTGAAGTTGGGATTGGGATACGGTTATTCATGCAACGCAGCCAGCATTGTGATGTTGGCCGTCACACTTCCTCTCTGCTTCTCCCTCACCGGTCTCAAACTCTCCAAACTCTGCTCTCACCAGCTCGACGCCGAGACCGTGCTGGCGGCTTCCGCTGCGCTCCTTTCCCTCGCCGCTCTCCACCGCTGGAAGCGCTTGGGAGCGGTGTATCTAGTGGACTTCGCGTGCTCCAAGCCGGACAAGGAACGGAAAATCTCGGTGGAGTCCTACCTGAAACTAAACGAAGATACTGGGGGGTTCGAAGAAGAGGCTCTTCAATTCCAAAGGAAGATTTCGACAAGATCGGGTCTTGGCGACGAGACTTACCTTCCCAGAGGAATCACTTCCCGCCCGCCCAATCTCTGCATGAGCGAGGCGCGCTTGGAGGCAGAAGAGGTGATGTTCGGCGCGTTGGACGCGCTTTTCGCGAAAACGGGCGTGGAGCCGAAGGACATTGACATCCTGGTGGTGAATTGTAGTGTGTTTAACCCCACCCCTTCTCTCTCCGCCATGATTGTGAACCACTACAAGCTGAGAAGCAACATCAAGAGCTACAACCTCGGAGGCATGGGATGCAGTGCCGGACTCATTTCCGTTGACCTGGCCAAGGACCTTCTCAAAGCCAACCCGAACTCCTACGCCCTGGTGCTCAGCACGGAGAACATAACCCTCAATTGGTACTTCGGCAAAGACCGCTCTATGCTCCTCTCCAACTGCATTTTCCGAATGGGCGCCGCCGCAGTCCTCCTCTCCAACAAGCCATCCGATCGGTCGCGATCTAAGTACCAGCTGCTCCACACCGTCAGAACCCACAAGGGCGCCGACGACAAGAGCTACAACTGCGTCTATCAGAAAGAGGACGATACCGGAAAAGTGGGGGTGTCTTTGGCGCGGGAGCTAATGGCTGTGGCAGGGGATGCTCTGAAGACAAACATCACAACCTTGGGTCCGATGGTTCTGCCTTACTCGGAGCAGTTGATGTTTTTCCTGTCACTGGTTCGGAGAAAGGTGTTGAAGATGTCGAGGGTGAAGCCGTACATTCCTAACTTCAAGCTGGCCTTCGAGCACTTCTGCATCCACGCCGGCGGAAGGGCGGTGTTGGATGAGTTGCAGAAGAATCTCCAGCTGAGCGAGTGGCACATGGAGCCCTCGAGAATGACGCTGCACCGCTTCGGCAACACCTCCAGCAGCTCCCTCTGGTATGAGCTTGCGTACACGGAAGCCAAGGGTCGGGTCGGCAAGGGGGACCGGGTCTGGCAGATCGCATTCGGGTCGGGTTTCAAGTGCAACAGCGCCGTCTGGAAGGCCATGCGGGACATGCCGAACTTAACTGAATGGCGTGGCAACCCCTGGGACGATTCCATCCACAACTATCCCGTTAATCTTTCATCTACTTCTTAA 1572 0.5592 MGGDSIDMDRERLTAEMDFKDSSSAVIRIRRRLPDFLQSVKLKYVKLGLGYGYSCNAASIVMLAVTLPLCFSLTGLKLSKLCSHQLDAETVLAASAALLSLAALHRWKRLGAVYLVDFACSKPDKERKISVESYLKLNEDTGGFEEEALQFQRKISTRSGLGDETYLPRGITSRPPNLCMSEARLEAEEVMFGALDALFAKTGVEPKDIDILVVNCSVFNPTPSLSAMIVNHYKLRSNIKSYNLGGMGCSAGLISVDLAKDLLKANPNSYALVLSTENITLNWYFGKDRSMLLSNCIFRMGAAAVLLSNKPSDRSRSKYQLLHTVRTHKGADDKSYNCVYQKEDDTGKVGVSLARELMAVAGDALKTNITTLGPMVLPYSEQLMFFLSLVRRKVLKMSRVKPYIPNFKLAFEHFCIHAGGRAVLDELQKNLQLSEWHMEPSRMTLHRFGNTSSSSLWYELAYTEAKGRVGKGDRVWQIAFGSGFKCNSAVWKAMRDMPNLTEWRGNPWDDSIHNYPVNLSSTS* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0061 523 CDD CHS_like 114 491 - -
Vra5g0061 523 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 412 492 IPR013747 -
Vra5g0061 523 SUPERFAMILY Thiolase-like 321 494 IPR016039 GO:0016746
Vra5g0061 523 PANTHER 3-KETOACYL-COA SYNTHASE 1 8 519 - -
Vra5g0061 523 Pfam FAE1/Type III polyketide synthase-like protein 108 394 IPR013601 GO:0006633|GO:0016020|GO:0016747
Vra5g0061 523 Gene3D - 120 493 IPR016039 GO:0016746
Vra5g0061 523 PANTHER 3-KETOACYL-COA SYNTHASE 8 519 IPR012392 GO:0006633|GO:0016020|GO:0016747
Vra5g0061 523 SUPERFAMILY Thiolase-like 107 316 IPR016039 GO:0016746
Vra5g0061 523 PIRSF Very_long_ch_3-ktacl-CoA_syn 35 523 IPR012392 GO:0006633|GO:0016020|GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0061 Vra-Chr5 471894 473808 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0061 4 519 Acyl Lipid Metabolism Gene Families AT1G01120 70.532 0.0 759
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0061 K15397 - gmx:100790385 912.909