Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Pumo2g01297 ATGGCTTCTCTCTTCGCGAGAACCAAGAGGTTCTCATTGCCTACTCTCCTGCTTCTCCTGCAGCTGTTGGCAATAAACCTTCGCACTGCAGATATTATTTTCCTTTGGCTAGTAGATGCCCAAATTGGAGTGTGTTATGGCATGATGGGCGACAATCTACCACCGGCAAACCAAGTTGTAAGTCTTTACAAATCAAACAACATAACCAGAATGAGAATCTATAATCCTGATCAAGCTGCTTTAAAAGCACTTAGAAATTCAGGTATTGAGCTCATTCTTGGGGTGCTCCACCAAGACCTTCAAGGCCTTGCCACCAACGCTGACATTGCTCGACAATGGGTGCAGAGCAACGTGTTGAACTTTTGGCCTAGTGTCAAAATCAAGTACGTGGCAGTTGGCAACGAAATTAATCCCGTTGGAGGCTCCTCTGAGTTTGCCCAATATGTGCTACCTGCAATCCAAAACATATACCAAGCTATAAGGGCTCAAGGCCTTCATGATCAAATCAAGGTTACAACAGCTATTGACATGACCCTATTAGGAAACTCCTTCCCCCCATCACAAAGCTACTTCAAGGCTGATGTAAGGTCATACATAGACCCCATAATTGGGTACTTGGTATATGCAAATGCACCTTTACTAGCCAATGTGTACCCTTATTTTAGTTATTCCGATAACCCGATTGACATATCACTTTCCTATGCTCTTTTCAACTCAACAAATGTTGTGGTTTCAGATGGTCAATATGGGTACCAAAATTTGTTTGATGCTATGTTGGATGCGGTGCATGACGCAATTGATAACACCAGTATTGGTTATGTGGAGGTTGTTGTATCCGAAAGTGGGTGGCCCTCGGATGGAGGGTTTGCTGCCACTTATGACAACGCGCGTGTCTACTTGGAAAATTTGATTCTTCGTGCTAAAAGAGGTAGCCCAAGAAGGCCTTCAAAGCCCACGGAGATTTATATATTTGTCATGTTTGATGAGAATCTAAAGAGTCCTGAAATAGAGAAACATTTTGGGTTCTTCTTTCCCAACAAACAAAAGAAGTACCCATTTGGATTTGGTGGAAAAAGGAATGGGGAAGTTATTATTGATAAGTTCAATGCAACAATTCCCCTTAAGAGTGACATGAATGGTCAGAATCCTACTTCTCAAAGTTTATGA 1167 0.4225 MASLFARTKRFSLPTLLLLLQLLAINLRTADIIFLWLVDAQIGVCYGMMGDNLPPANQVVSLYKSNNITRMRIYNPDQAALKALRNSGIELILGVLHQDLQGLATNADIARQWVQSNVLNFWPSVKIKYVAVGNEINPVGGSSEFAQYVLPAIQNIYQAIRAQGLHDQIKVTTAIDMTLLGNSFPPSQSYFKADVRSYIDPIIGYLVYANAPLLANVYPYFSYSDNPIDISLSYALFNSTNVVVSDGQYGYQNLFDAMLDAVHDAIDNTSIGYVEVVVSESGWPSDGGFAATYDNARVYLENLILRAKRGSPRRPSKPTEIYIFVMFDENLKSPEIEKHFGFFFPNKQKKYPFGFGGKRNGEVIIDKFNATIPLKSDMNGQNPTSQSL 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Pumo2g01297 388 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 29 355 IPR044965 GO:0004553|GO:0005975
Pumo2g01297 388 FunFam glucan endo-1,3-beta-glucosidase, basic 42 355 - -
Pumo2g01297 388 Pfam Glycosyl hydrolases family 17 42 353 IPR000490 GO:0004553|GO:0005975
Pumo2g01297 388 SUPERFAMILY (Trans)glycosidases 42 353 IPR017853 -
Pumo2g01297 388 ProSitePatterns Glycosyl hydrolases family 17 signature. 274 287 IPR000490 GO:0004553|GO:0005975
Pumo2g01297 388 Gene3D Glycosidases 41 356 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Pumo2g01297 Pumo-Chr2 19073182 19076132 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Pumo2g01297 48 364 Glycoside Hydrolase AT4G16260 58.307 1.02e-135 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Pumo2g01297 - - ccaj:109791097 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Pumo2g01297 2 19073182 19076132 Pumo2g01297 2 19073182 19076132 ECH