Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian4g00064 ATGAGAGTTCTGGAGAGTGCTTCTCTGGTTGAACTTGTTACTCTTCTGAATATGGCTTTGCAGAAGTATGCTCCTTCTGGCCATGCACCTCCCATTAATATGAAACATTTGACCTTTTCCAGTAAGATGCCTAAGAAAGCTGAGCATGACACGGCATGTCAGAATCATAACATGGATGTGGATATTGACCTTAGGGAAGTTTATTTTCTCATTATGCACTTTCTTTCAGCTGGGCCATGCCATAAAACTTATTTACAATTTTGGAATGAGCTTCTTGAGCATGAACTTTTGCCTAGAAGGTATCATGCGTGGTATTCAAAGACTGGAGCATGTAGTGGAGACAAAGATGATGATGGTCTATCATTCCCTTTAAATTACAATATGTTAGTGGAGAGGTATCCTCATATTGAGAGGGATCACCTGGTAAAGCTTTTAAAGCAATTGTTATTAAGTACAACCATTCCATCACTGGGTATGAATCTTGGAAATGCCCCAAATGCGGCTGATGTACCTACACTTTTAGGAAGTGGTTCATTTTCACTGCTGAGCTATGATAGGGATAAAATGAAAGAAGTCAAACGGCCACCTCCTCACATGCGCTGGCCTCATATGAAAGTCAATCAAGTTCATGGGCTTAATTTGAGGGAAATCGGGGGTGGTTTCCCAAGACATCACCGTGCACCATCTATACGTTCTGCATGCTATGCCATCGCAAAACCTTCTACCATGGTGCAAAAAATGAAAAATATCAAGAGGTTAAGAGGACACCGCAATGCTGTTTATTGTGCTATATTTGATCGGTCTGGAAGGTATGTGATTACTGGTTCAGATGACAGACTTGTAAAGGTTTGGTCAATGGAAACTGCATATTGTTTGGCCAGTTGCCGTGGACATGATGGTGACATCACTGATTTGGCCGTGAGTTCAAACAATGCTTTAGTTGCATCCTCGTCAAATGACTGTGTCATTCGAGTTTGGCGCTTGCCAGATGGCTTGCCAATATCGGTATTGCGGGGACATACTGGAGCTGTTACTGCCATAGCATTTAGTCCCAGACCAAATGCTGTATACCAGCTTTTATCTTCCTCTGATGATGGAACTTGTAGGATATGGGATGCAAGGTATACCCAGTCAAGTCCAAGATTATATATTCCAAGGCCTTCAGATTCTGTAATTGGGAAGAGCAGTGGCCCATCTTCAAGTACTGTACCACAGAGCCATCAGATTTTTTGCTGTGCATATAATGCTAATGGAACTGTCTTTGTAACTGGTAGCTCTGACAATCTTGCTAGGGTTTGGAATGCTTGTAAACTTAGCACAGATGATAGTGACCAACCAAATCATGAGATAGACGTGCTATCTGGCCATGAGAATGATGTGAATTATGTGCAATTCAGTGGTTGTGCAGTTGCATCCCGGTTTTGCACAACAGAAACTTGGAAGGAGGAAAATATTCCCAAATTTAAAAATTCCTGGTTGAATCATGATAATATAGTTACCTGCTCTCGTGATGGGAGTGCTATAATATGGATTCCTAGATCTCGTAGATCACATGGAAAAAGTGGTCGCTGGACACGGGCATATCATCTAAGAGTTCCACCTCCACCTACTCCTCCTCAACCTCATAGAGGTGGTCCTCGTCAGAGAATTCTACCAACTCCACGTGGTGTAAATATGATTGTTTGGAGCCTTGACAACCGCTTTGTTCTTGCAGCTATTATGGATTGCAGAATTTGTGTTTGGAATGCATCTGACGGAAGCTTAGTACACTCATTGACTGGGCATACTGAATCTACATATGTTCTGGATGTTCATCCTTTCAATCCCCGAATAGCTATGAGTGCTGGATATGATGGAAGAACTATTGTTTGGGACATATGGGAGGGCATGCCTATCCAGATATATGAGATATCACGTTTCAAGTTGGTGGATGGAAAATTTTCTCCAGATGGGACATCAATTATACTTTCGGATGATGTTGGTCAACTATATATATTAAGCACAGGTCAAGGCGAGTCCCAAAAAGATGCCAAATATGATCAGTTCTTTCTCGGTGATTATCGACCTCTGATTCAAGACACCCACGGTAATGTACTAGACCAGGAAACTCAAATTGTCCCGTATCGACGGAATGTGCAAGATTTGCTTTGTGATTCAGCAATGATACCATACCCTGAACCTTATCAGAGTGAATTTCAGCAAAGAAGATTAGGAGCATTAGGCCTTGAGTGGCGTCCATCATCGCTAAGGCTTGCTGTTGGTCCTGATTTCAATCTGGACCCTGATTATCACATGCTTCCATTGGCAGACCTGGATTTGGTTACAGAACCACTGCCTGAGTTTATAGATGTTATGGAATGGGAACCTGAAGTTGAGGTGTTTAGCGATGATGCAGATTCAGAATATAACGTCACTGAAGATTGCTCTTCTAAGGGTGAGAAAGGATGTTCAACCTCCAATGCTTCTGGTGATTCAGGGTGCAGCACAGACAACAGCGAAGGGGAAGACAATCACATGGAAAGCATCCGTAGATCAAAGAGGAAAAAACAGAAGACTGAGACTGAGATTATGACTTCTTCTGGGAGACGTGTGAAAAGGAGGAACTTGGATGAGTGTGATGACAATACCATTGGGAGTAGCAGACGTAGGAAGGGAAAAAGTGGCCAAAAAATATCAAGAAGGAAATTTTCAAAATCTAAATCTTCCCGGCCTCAAAGGGCTGCTGCACGCAATGCTCTTCATCTATTTTCTAAAATTACTGGTACACCGACAGACGGAGATGGAGATGAAGATAGTTTGATTGGTGATTTTTCAGACAGTGAATCAACATTGCAAGAGTCTAATATTGACAGTGATGAATCTGATGGAACTTTACAGAATGATCAATTGAATTATTCCAAGGGAAAAGAAGTGTCCTATTATGAATCAGAGGACACAAAATCTCATGAGTTAACTGAAACTCGTGTGAATTCAATGAACAAGAGGAGGTTGGTTCTGAAGTTGCCAATTCGTGATATATCCAAGTCCACAAACGAGTTTGATTACCAGGCTGAGTTGGCTGGCTCATCATCAAAAACTATACCAGAACTTACTGATTTTAATGAAAACAGACAAAGTTTTAAGGATTCAGGTTATTATTCTGGCAGTACAAGTAACCCTACAGTTGAAAGAACAGATAAACCAAAACTTGGCCAGGTCAAAGACCATGTAGATTTGCTGGGGAAAATTAAATGGGGAATGGTTAGGGCACGATCATCTAAACCCATGAGAGTGGGAGAAGCTGTGCCATCGGAAGAAAATCCTTACTCTGGAAAATGTCCTAATCATGATGAGAAACAGAATGTTAGTAGTGGGCATGAGAAAGAGGAAAAGAACTTTAGTGCACCAACCCCTGAGTTTGAAACCCAAAATGATGACAGTCTGGTTGATAGTTTGGCAGAGATTAATGAAAATTGTGCTGATACTACCACCTCACAGCCTTTTAATCCCACCGTTAATGGAGGAAAGATCATAGGTTCCAGCAATTGCAGGGACAAAGATGAATCACTAATTCCAGCATATGTGATTCCTCAGGATACTGTTCCTGCTTCAATCAGCTATAGTGGGGTTGACCAACTACCTGAACCAAATATTAGTTTTTGTTCTGTTTCAACAAAACTAAGGTCGAAAAGGGGTGCAAGGGATCCTGAAAGTCCATCCAAGCATGAAATAAAATCGTCCGTGCTAAAGAATACTGTGTGTAGCTCTAATGATAATACTACTTTGAACAATGATGAACAGCATGTGCTTGTGGATGACAACACTAGAGATAAATCCAATCTGGGAGAGAATGTATATCAAGAAATAGATCCTCAGATTAGAGAGAATAGTACTTCACAGGATTTGCTAGAACCACAAGCACAAAGAGATAAAATGTATAAAGCGGTTTATAGAAGGTCAAGATCACATAGGGCTGTGGCTAATTTAGCTGACAGTGGTGGCCAGGGTGAATCTACTTCAAATGGGAGCAACAGTAATTTCAACACCGCAGCAGACTTCTGTAATGGCACAAATGAGGCTGTTCATATCAATGGCTCCTTAGAGTTGGAACCAATTACTTGTGACCCAAACTATGAGCAGAATAATTGCAAAGTGCTGCAAGGACATCATGGAGATTCTATTATTAAAAGTCCACAAAATGTTTCCACAAGTGGAGGACAACTCACAGAAGAAGAAAGGGGTTCTAGCTCAAAATTGACTGTTGGTTTGAGGTCTACTAGGAGTCGGAGATCTAGTTATAATATTCGTGAGACTAGTCCTGTAAATAAAAGGAAATCACTACAATCGAATGTGAAAGTATCATGGTTGTTGTTATCAACCCATGAAGAAGGATGCAGATATATTCCACAACAGGGAGATGAAGTTGTATATTTGAGACAGGGACACCAAGAGTATATAGATTATTGTCGTAAAAATGAGTCAGGGCCTTGGAATTCACTCAAGGGACATATAAGAGCTGTAGAATATTGTAGAGTTCAAAGCCTGGAGTATTCCCATCTCGCAGGATCTGGTGATAGCTGCTGCAAAATGACCCTTCAGTTCGTAGATCCTAATTCAAGTGTTGTTGGGAAATCTTTTAAGTTAACCCTACCTGAAGTTACTAATTTCCCAGATTTTCTAGTTGAAAGAACTAGGTTTGATGCCGCTATGCAAAGAAATTGGACACGCAGGGATAAATGCAGGGTTTGGTGGAGAAGTGAGGATAATTCCTCTGGTAATTGGTGGGATGGTCGAATTTTGTGCGTAAAAGCCAAGTCTTCTGAATTTTCAGACAGTCCATGGGAGAGCTGTACTGTTCGGTACAAAAATGACCTCACTGAAACGCATTTGCATAGTCCTTGGGAGCTTTTTGATGCTGAAACTGTATGGGAACAGCCTCACATTGATGATAGCATGAGAAATAAACTGCAATCTGCTCTCACCAAATTACTGCAGTCAGGCAACACAGTCCAGGATCGTTACGGAGTGCATGAATTGAAGAAGATTTCAAGCAAGTCCAAATTTATAAACAGGTATCCTGTTCCTATATCACTTGAATTGGTGCAGTCAAGGCTGAAGAACAATTACTACCGTAGTTTGGAGGCTCTGCAGCACGATGTGGCAAATTTACTGGCTAATTCCACTTCCTTTTTTGAAAAGGATGCCGAGATTTCAGCAAAAATCAAACGCCTATCAGAATGGTTCACACGAACATTATCACCTCTATAG 5247 0.4119 MRVLESASLVELVTLLNMALQKYAPSGHAPPINMKHLTFSSKMPKKAEHDTACQNHNMDVDIDLREVYFLIMHFLSAGPCHKTYLQFWNELLEHELLPRRYHAWYSKTGACSGDKDDDGLSFPLNYNMLVERYPHIERDHLVKLLKQLLLSTTIPSLGMNLGNAPNAADVPTLLGSGSFSLLSYDRDKMKEVKRPPPHMRWPHMKVNQVHGLNLREIGGGFPRHHRAPSIRSACYAIAKPSTMVQKMKNIKRLRGHRNAVYCAIFDRSGRYVITGSDDRLVKVWSMETAYCLASCRGHDGDITDLAVSSNNALVASSSNDCVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPNAVYQLLSSSDDGTCRIWDARYTQSSPRLYIPRPSDSVIGKSSGPSSSTVPQSHQIFCCAYNANGTVFVTGSSDNLARVWNACKLSTDDSDQPNHEIDVLSGHENDVNYVQFSGCAVASRFCTTETWKEENIPKFKNSWLNHDNIVTCSRDGSAIIWIPRSRRSHGKSGRWTRAYHLRVPPPPTPPQPHRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGMPIQIYEISRFKLVDGKFSPDGTSIILSDDVGQLYILSTGQGESQKDAKYDQFFLGDYRPLIQDTHGNVLDQETQIVPYRRNVQDLLCDSAMIPYPEPYQSEFQQRRLGALGLEWRPSSLRLAVGPDFNLDPDYHMLPLADLDLVTEPLPEFIDVMEWEPEVEVFSDDADSEYNVTEDCSSKGEKGCSTSNASGDSGCSTDNSEGEDNHMESIRRSKRKKQKTETEIMTSSGRRVKRRNLDECDDNTIGSSRRRKGKSGQKISRRKFSKSKSSRPQRAAARNALHLFSKITGTPTDGDGDEDSLIGDFSDSESTLQESNIDSDESDGTLQNDQLNYSKGKEVSYYESEDTKSHELTETRVNSMNKRRLVLKLPIRDISKSTNEFDYQAELAGSSSKTIPELTDFNENRQSFKDSGYYSGSTSNPTVERTDKPKLGQVKDHVDLLGKIKWGMVRARSSKPMRVGEAVPSEENPYSGKCPNHDEKQNVSSGHEKEEKNFSAPTPEFETQNDDSLVDSLAEINENCADTTTSQPFNPTVNGGKIIGSSNCRDKDESLIPAYVIPQDTVPASISYSGVDQLPEPNISFCSVSTKLRSKRGARDPESPSKHEIKSSVLKNTVCSSNDNTTLNNDEQHVLVDDNTRDKSNLGENVYQEIDPQIRENSTSQDLLEPQAQRDKMYKAVYRRSRSHRAVANLADSGGQGESTSNGSNSNFNTAADFCNGTNEAVHINGSLELEPITCDPNYEQNNCKVLQGHHGDSIIKSPQNVSTSGGQLTEEERGSSSKLTVGLRSTRSRRSSYNIRETSPVNKRKSLQSNVKVSWLLLSTHEEGCRYIPQQGDEVVYLRQGHQEYIDYCRKNESGPWNSLKGHIRAVEYCRVQSLEYSHLAGSGDSCCKMTLQFVDPNSSVVGKSFKLTLPEVTNFPDFLVERTRFDAAMQRNWTRRDKCRVWWRSEDNSSGNWWDGRILCVKAKSSEFSDSPWESCTVRYKNDLTETHLHSPWELFDAETVWEQPHIDDSMRNKLQSALTKLLQSGNTVQDRYGVHELKKISSKSKFINRYPVPISLELVQSRLKNNYYRSLEALQHDVANLLANSTSFFEKDAEISAKIKRLSEWFTRTLSPL 1748
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian4g00064 1748 SUPERFAMILY WD40 repeat-like 244 668 IPR036322 GO:0005515
Vian4g00064 1748 ProSiteProfiles Trp-Asp (WD) repeats profile. 592 626 IPR001680 GO:0005515
Vian4g00064 1748 FunFam PH-interacting protein isoform X1 228 397 - -
Vian4g00064 1748 FunFam WD40/YVTN repeat-like-containing domain 1642 1748 - -
Vian4g00064 1748 MobiDBLite consensus disorder prediction 1038 1058 - -
Vian4g00064 1748 MobiDBLite consensus disorder prediction 531 545 - -
Vian4g00064 1748 MobiDBLite consensus disorder prediction 1112 1128 - -
Vian4g00064 1748 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 337 372 - -
Vian4g00064 1748 Gene3D - 242 402 IPR015943 GO:0005515
Vian4g00064 1748 Pfam Bromodomain 1686 1733 IPR001487 GO:0005515
Vian4g00064 1748 ProSiteProfiles Trp-Asp (WD) repeats profile. 402 434 IPR001680 GO:0005515
Vian4g00064 1748 CDD WD40 249 625 - -
Vian4g00064 1748 MobiDBLite consensus disorder prediction 1387 1424 - -
Vian4g00064 1748 Gene3D - 488 683 IPR015943 GO:0005515
Vian4g00064 1748 CDD Bromo_WDR9_I_like 1620 1746 - -
Vian4g00064 1748 FunFam PH-interacting protein isoform X1 485 683 - -
Vian4g00064 1748 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 295 328 - -
Vian4g00064 1748 MobiDBLite consensus disorder prediction 1038 1059 - -
Vian4g00064 1748 Pfam WD domain, G-beta repeat 586 625 IPR001680 GO:0005515
Vian4g00064 1748 Pfam WD domain, G-beta repeat 248 285 IPR001680 GO:0005515
Vian4g00064 1748 Pfam WD domain, G-beta repeat 405 434 IPR001680 GO:0005515
Vian4g00064 1748 Pfam WD domain, G-beta repeat 333 372 IPR001680 GO:0005515
Vian4g00064 1748 Pfam WD domain, G-beta repeat 291 326 IPR001680 GO:0005515
Vian4g00064 1748 SUPERFAMILY Bromodomain 1684 1746 IPR036427 GO:0005515
Vian4g00064 1748 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 253 288 - -
Vian4g00064 1748 ProSiteProfiles Trp-Asp (WD) repeats profile. 253 294 IPR001680 GO:0005515
Vian4g00064 1748 MobiDBLite consensus disorder prediction 529 549 - -
Vian4g00064 1748 FunFam WD40 domain-containing protein 398 478 - -
Vian4g00064 1748 Gene3D - 1641 1748 IPR036427 GO:0005515
Vian4g00064 1748 PANTHER WD REPEAT DOMAIN 9 54 1743 - -
Vian4g00064 1748 Gene3D - 403 472 IPR015943 GO:0005515
Vian4g00064 1748 Coils Coil 1699 1719 - -
Vian4g00064 1748 ProSiteProfiles Trp-Asp (WD) repeats profile. 337 381 IPR001680 GO:0005515
Vian4g00064 1748 ProSitePatterns Trp-Asp (WD) repeats signature. 612 626 IPR019775 -
Vian4g00064 1748 ProSiteProfiles Trp-Asp (WD) repeats profile. 295 336 IPR001680 GO:0005515
Vian4g00064 1748 MobiDBLite consensus disorder prediction 883 901 - -
Vian4g00064 1748 MobiDBLite consensus disorder prediction 1089 1137 - -
Vian4g00064 1748 ProSiteProfiles Bromodomain profile. 1688 1731 IPR001487 GO:0005515
Vian4g00064 1748 SMART WD40_4 585 625 IPR001680 GO:0005515
Vian4g00064 1748 SMART WD40_4 330 372 IPR001680 GO:0005515
Vian4g00064 1748 SMART WD40_4 544 582 IPR001680 GO:0005515
Vian4g00064 1748 SMART WD40_4 396 434 IPR001680 GO:0005515
Vian4g00064 1748 SMART WD40_4 246 285 IPR001680 GO:0005515
Vian4g00064 1748 SMART WD40_4 288 327 IPR001680 GO:0005515
Vian4g00064 1748 SMART WD40_4 446 511 IPR001680 GO:0005515
Vian4g00064 1748 MobiDBLite consensus disorder prediction 831 881 - -
Vian4g00064 1748 MobiDBLite consensus disorder prediction 796 940 - -
Vian4g00064 1748 MobiDBLite consensus disorder prediction 810 830 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian4g00064 Vian-Chr4 573054 592209 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vian4g00064 245 434 Miscellaneous Gene Families AT5G08390 21.990 1.42e-09 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian4g00064 K11797 - gmx:100818665 3038.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vian4g00064 4 573054 592209 Vian4g00064 4 573054 592209 ECH