Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu9g2658 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tsu08g00839 . . Vimu10g00091 . . Vra5g0057
Pvu9g2659 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu9g2660 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lan4g0807 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu10g00087 . . Vra5g0056
Pvu9g2661 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g03034 . . . . . . . . . . . Tsu08g00815 . . Vimu10g00085 . . .
Pvu9g2662 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tsu08g00811 . . Vimu10g00083 . . Vra5g0053
Pvu9g2663 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lan4g0811 Lan16g1141 . . . . . . . . . . . . . . Phco7g03036 . . . . . . . . . . . . . . Vimu10g00081 . . Vra5g0052
Pvu9g2664 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lan4g0812 Lan16g1140 . . . . . . . . . . . . . . Phco7g03037 . . . . . . . . . . . . . . Vimu10g00079 . . Vra5g0051
Pvu9g2665 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g03038 . . . . . . . . . . . . . . Vimu10g00078 . . Vra5g0050
Pvu9g2666 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g03039 . . . . . . . . . . . . . . Vimu10g00077 . . Vra5g0049
Pvu9g2667 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g03040 . . . . . . . . . . . Tsu08g00810 . . Vimu10g00076 . . Vra5g0048
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu9g2658 Chr9 37017883 37021905 -
Tsu Tsu08g00839 Chr08 9120199 9131046 +
Vimu Vimu10g00091 Chr10 521773 525010 +
Vra Vra5g0057 Chr5 451434 455149 +
Pvu Pvu9g2659 Chr9 37025859 37027216 -
Pvu Pvu9g2660 Chr9 37034389 37039887 -
Lan Lan4g0807 Chr4 10104920 10108950 +
Vimu Vimu10g00087 Chr10 496814 501401 +
Vra Vra5g0056 Chr5 447208 450796 +
Pvu Pvu9g2661 Chr9 37044407 37044973 -
Phco Phco7g03034 Chr7 48953873 48954436 -
Tsu Tsu08g00815 Chr08 8789081 8789763 +
Vimu Vimu10g00085 Chr10 480228 480791 +
Pvu Pvu9g2662 Chr9 37047379 37050660 +
Tsu Tsu08g00811 Chr08 8744692 8749051 -
Vimu Vimu10g00083 Chr10 471191 473587 -
Vra Vra5g0053 Chr5 428353 431400 -
Pvu Pvu9g2663 Chr9 37051528 37055435 -
Lan Lan4g0811 Chr4 10122423 10132183 -
Lan Lan16g1141 Chr16 18465491 18469601 +
Phco Phco7g03036 Chr7 48961980 48965948 -
Vimu Vimu10g00081 Chr10 467419 467900 +
Vra Vra5g0052 Chr5 417210 421409 +
Pvu Pvu9g2664 Chr9 37054907 37057045 +
Lan Lan4g0812 Chr4 10127236 10129765 +
Lan Lan16g1140 Chr16 18462329 18464745 -
Phco Phco7g03037 Chr7 48969672 48970920 +
Vimu Vimu10g00079 Chr10 464493 465734 -
Vra Vra5g0051 Chr5 415780 417378 -
Pvu Pvu9g2665 Chr9 37058889 37061682 +
Phco Phco7g03038 Chr7 48972097 48975456 +
Vimu Vimu10g00078 Chr10 459731 463035 -
Vra Vra5g0050 Chr5 411380 415651 -
Pvu Pvu9g2666 Chr9 37062760 37064016 -
Phco Phco7g03039 Chr7 48976797 48978287 -
Vimu Vimu10g00077 Chr10 456504 457883 +
Vra Vra5g0049 Chr5 408291 410775 +
Pvu Pvu9g2667 Chr9 37064343 37070740 +
Phco Phco7g03040 Chr7 48978683 48982718 +
Tsu Tsu08g00810 Chr08 8730346 8735577 -
Vimu Vimu10g00076 Chr10 449974 455969 -
Vra Vra5g0048 Chr5 404026 408131 -
Tsu Tsu08g00839 Chr08 9120199 9131046 +
Tsu Tsu08g00815 Chr08 8789081 8789763 +
Tsu Tsu08g00811 Chr08 8744692 8749051 -
Tsu Tsu08g00810 Chr08 8730346 8735577 -