Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca08g01752 ATGGCTTCTCTCTTCCTTAGAAACCAGAGGTTCTCATTGGCTACTCTACTGCTTCTTTTGGAACTATTGACAGTAAACCTTCGCACGGCAGATGCTCAAATTGGCGTATGTTATGGCATGTTGGGCAACAATCTACCACCAGCAAACGAAGTTGTGGGTCTTTACAAATCAAACAATATAAGGAGAATGAGACTGTATGATCCTAATCAAGCTGCTCTACAAGCACTTAGAAATTCCGGCATTGAACTCATTCTTGGAGTGCCCAATTCCGATCTTCAAGGCCTTGCCACAAATGCTGACACTGCTCGCCAATGGGTGCAAAGAAACGTGTTGAACTTTTGGCCTAGTGTCAAAATCAAGTACGTGGCAGTTGGCAATGAAGTGAATCCTGTTGGAGGCTCTTCTTGGCTAGCCCAATATGTTCTACCTGCTGTCCAAAACGTGTACCAAGCTATAAGAGCTCAAGGCCTTCATGATCAGATCAAGGTTTCAACGGCTGTTGACATGACCCTAATAGGAAACTCCTACCCTCCATCACAAGGTTCCTTTAGGGGTGATGTGAGGTCATACCTAGACCCAATAATTGGGTACTTGCTATATGCGAGTGCACCTTTATTAGTCAATGTGTACCCTTATTTTAGTTACTCCGGTAACCCTCGTGACATATCACTTCCCTATGCTCTTTTCACCTCACCAAATGTTGTGGTACAAGATGGTCAATATGGGTACCAAAATTTGTTTGATGCTATGTTGGATTCGGTGCATGCCGCAATTGATAACACTAGGATTGGTTACGTGGAGGTGGTTGTGTCCGAGAGTGGGTGGCCCTCGGATGGAGGGTTTGGTGCCACTTATGACAATGCACGCGTGTACTTGGATAACTTGGTTCGTCGTGCTAAAAGAGGTAGTCCAAGAAGGCCTTCAAAGCCCACAGAGACTTACATATTTGCCATGTTCGATGAGAATCAAAAGAGTCCGGAGATAGAGAAACATTTTGGGCTCTTCAGTCCCAATAAGCAAAAGAAATACCCGTTTGGGTTCGGTGGAAAAAGGGATGAGGAAGTTTTTATTGATGACTTCAATGCAACGATTTCTCTTAAGAGTGACATCACAGCAGAGAGCTCCCTCCTTGAATCTAAATTCGCATTGTGGCGCGTGATTCACACTCGACGGGTTCCGCGGAATTTGACTGGCCCAGGACACGGTTACTCTCGAATTCCAGTGACCGAACCTCTCGAGAGGAATGCGTCATGGATTCTGTGGAGGTTCAGGGTTTCAGTGGAGTGGATAAGAGCTTTGGAGAGTGCTTCTCTGGTTGAATCTGTCACTCATTTGAATATGGCATTGCAGAAGTATGTTCCTTCTGGCAATGCACCTTCTGGTAATATGAAACATTTGAGCTTTTCCAGTAAGGTGCCTAAGAAAGCTGAGCTTGATGAGGCAAATAAGAATCATGACATGGATGTGGATGTTGACCTTAGGGAAGTTTATTTCCTCATTATGCACTTTCTTTCTGCTGGGCCATGTCATAAAACTTATTTACAGTTTTGGAATGAGCTTATTGAGCATCAGCTTTTGCCTAGAAGGTATCATGCTTGGTATTCAAGGACTGCAGCACGTAGTGGAGATGAAGATGATGACGGTCTATCATGCCCTTTAAATTACAATATGTTAGTGGAGAGGTATTCTCATATTGAAAAAGATCACTTGGTAAAGCTTTTGAAGCAATTGTTATTAAATACAGCTTCCCCATCACTGGGTATGAATCTTGGAAATGCTCCAAATGCAGCTGATGTACCTACTCTTCTAGGAAGTGGTTCATTTTCACTTCTGAGCTTTGATAGGGATAAAATGAAAGAAATCAAAAGGCCACCTTCTCATATGCGTTGGCCTCATATGAAAGCCAATCAGGTTCATGGGCTTAATTTGAGGGAACTTGGGGGTGGTTTCCCAAGACACCACCGTGCACCATCTATACGTGCTGCATGCTATGCCATCGCAAAACCTTCAACCATGGTGCAAAAGATGCAAAATATTAAGAGATTAAGAGGACACCGTAATGCTGTCTATTGTGCTATATTTGATCGATCAGGAAGATATGTGATTACTGGTTCAGATGATCGACTCGTAAAAGTCTGGTCAATGGAAACTGCATATTGTTTGGCCAGTTGCCGGGGGCATGATGGTGATATCACTGACTTGGCTGTGAGTTCAAACAATGCTTTAGTTGCATCCTCATCAAATGACTGTGTCATCCGAGTGTGGCGCTTGCCAGATGGCTTACCAATATCAGTTTTGCGGGGACATACCGGAGCTGTTACAGCCATAGCATTTAGTCCCAGACCAAATGCTGTATACCAGCTTTTATCTTCCTCTGATGATGGAACTTGTAGGATATGGGATGCAAGGTATACCCAGTCAAGTCCAAGATTATATGTTCCAAGACCTCCTGATTCAGTAATTGGGAAGAGCAGTGGCCCATCTTCAAGTACTTTACCACAGAGCCATCAGATTTTTTGCTGTGCATTTAATGCTAATGGAACTGTCTTTGTAACTGGTAGCTCTGACAATCTTGCTAGGGTGTGGAATGCTTGTAAACTTAGTATGGATGACACTGACCAACCAAATCATGAGATAGATGTGCTCTCTGGGCATGAAAATGATGTGAATTATGTGCAATTCAGTGGATGTGCAGTAGCATCTCGATTTTCCACAGCAGAAACTTGGAAGGAGGAAAATATTCCCAAATTTAAAAATTCCTGGTTGAATCATGACAACATTGTTACCTGCTCTCGTGATGGGAGTGCTATTATATGGATTCCCAAATCACGCAGGTCACATGGAAAAAGTGGTCGCTGGACACGGGCATATCATCTGAGAGTTCCACCTCCACCTATGCCTCCTCAACCTCAGAGAGGTGGTCCTCGTCAGAGAATTCTGCCAACTCCACGTGGTGTAAATATGATTGTTTGGAGCCTTGACAACCGCTTTGTCCTCGCAGCTATTATGGATTGCCGAATTTGTGTTTGGAATGCTTCTGATGGCAGCTTAGTACACTCATTGACTGGTCATACTGAATCTACATATGTTCTGGATGTTCATCCTTTCAATCCCCGGATAGCTATGAGTGCTGGATATGATGGAAGAACTATTGTATGGGATATATGGGAAGGCATGCCTATCCGGATATATGAGATATCACGCTTCAAGTTGGTGGATGGAAAGTTTTCTCCGGATGGGACATCAATTATACTTTCAGATGATGTTGGTCAACTATATATATTAAGCACAGGTCAAGGTGAGTCCCAAAAAGATGCCAAATATGATCAGTTCTTTCTTGGTGATTATCGACCTCTGATTCAAGATACTCATGGTAATGTACTAGATCAGGAAACTCAAATTGTTCCATATCGGCGGAACCTGCAAGATTTGCTTTGTGATTCAGCAATGATACCATACCCAGAACCTTATCAGAGTGAATTTCAGCAAAGAAGATTAGGAGCTTTAGGCCTTGAATGGCGCCCTTCTTCACTAAAGCTTGCTGTGGGTCCTGATTTCAGTCTGGACCCAGATTATCATATGCTTCCATTGGCAGACTTGGATTTGCTTACAGAACCACTGCCTGAGTTCATAGATGCTATGGAATGGGAACCTGAAGTTGAAGTGTTTAGTGATGATACAGATTCAGAATATAATGTCACTGAAGATTTCTCTTCTAGGGGTGAGAAAGGATGTTCAAGCTCCAATGCCTCTGGTGATTCAGGGTGTAGCACAGATAACAGTGACGGGGAGGAGACTCACATGGATAGCATTCGTAGATCAAAAAGGAAAAAACAGAAGATTGAAACTGAGATTATGACGTCTTCAGGGAGACGTGTGAAAAGGAGAAATTTGGATGAGTGTGATGGAAATACTTTTGGAAGTAGCCGAAGTAGGAAGGGAAAAAGTGGCCAAAAGACATCAAGACGGAAATCTTCTAAATCAAAATCTTCCAGACCTCAAAGGGCTGCTGCACGCAATGCTTTGCATCTATTTTCCAAAATTACTGGTACCCCAACAGATGGAGAAGAAGATAGTTTGGTTGGTGATTTTTCAGATAGTGAATCAACATTGCAAGAGTCTAACATAGACAGTGATGAATCTGGTGAAACTTTACAGAATGACCAACTGAATTGTTCTAAGGGAAAAGAAATATCATATTGTGAATCCGAGGACACAAAATCTCACGAGTTAACTGGAACTCATGTGAATTCAATGAACAAGAGGAGATTGGTTCTCAAGTTACCAATTCGTGAAATATCCAAGCCTGCGAATGAGTTTGACTACCAGGCTGAGTTAGTTGGTTCATCATCAAAAACTGCACAAGAAGCTACTGATTTTATTATGAACAAACCAAGTTCTAAGGATTCAGGGTATTATTCTGGTAGCACAAGTTACCCTACAGTTGAAAGAACGGATCAGGTAATAGACCATGTTGACATGCTGGGGGAAATTAGATGGGGAATGGTTAGGGCTCGTTCATCTAAGCCTTTGAGAGTGGGAGAAACTGTTCCATCAGACGCCGAAACATGTCATCATGACGAAAAAGAAAATGTTGTTAGTACTGGGCATGAGAAAGAGGACAAGAACTTCAGTCCATTAACCCCTGATTTAGAAATCCAAAATGATGACAGTTTGATGGAGATTAATGAAATTTGTGATGGTACTACCTCGCAGCCTTTTAATCCTACTCAGAAAGCAGAAGAGATCACAGCTTCCAGCAATTGCAGGGACAATGATGAATCACTAATTTCTGCTTACATGATTCCTCAGGATACTGTTCCTGCTTCCATCAGCTATGGTAGGGTTGACCAACTACCTGAACCAAATATTGGGTTTCCTTCTGTTTCAACTAAACTAAGGTCTAAAAGGGGTTCAAGGGATCCTGAAAGTCCATCCAAGCATGAAACAAAATCTTCCATGCTAAAGAATAGTGCATGTAGCGGTGATGATAATAATAATTTCAACAATGAATATGTGGTTGTGGACGACAACACTAAAGTAACATGTAATCAGGGAGACAATGGAACTCAAGAAATAGAGCCTCGGATTAGACAAAATAGTACATCACATGATTTTCTAGAGCCACATTCACAGAGAGATAAAATGTATAAAGCTGTTTATAGAAGATCAAGATCACACAGGACTGTGACTAATTTAGCTGACAGTAGTGGCCCAGGAGAATCCACTTCAAATGGGAGCAACAGTACTCTTAATGCAGCAGCAGACTTCAATAATGGGACAAATGAGGCTATTCATACAAATGGACCCTTAGAGTTGGAACCAACCACTTGTGACCCAAATAATGAGAAGAATAATCTCAGAGTGCATGGAAATGGTTTGGTTAAAAGTCCACAAAATGTTTCCACAAGTGGAGAACAATTCACAGAAGAAGAAAGGGGTTCTAATTCAAAGTTGACCGTAGGTTTGAGGTCAACTAGGAGTCGGAGGTCTAGTTATAATATTCATGAGGCTAGTCCTGTAAATAAAAGGAAATCACTACAATCAGCTACCAAAGGATCATGGTTGCTGTTATCAACCCATGAGGAGGGATGCAGATATATTCCACAACAGGGAGATGAAGTTGTATATTTGAGACAG 5640 0.4209 MASLFLRNQRFSLATLLLLLELLTVNLRTADAQIGVCYGMLGNNLPPANEVVGLYKSNNIRRMRLYDPNQAALQALRNSGIELILGVPNSDLQGLATNADTARQWVQRNVLNFWPSVKIKYVAVGNEVNPVGGSSWLAQYVLPAVQNVYQAIRAQGLHDQIKVSTAVDMTLIGNSYPPSQGSFRGDVRSYLDPIIGYLLYASAPLLVNVYPYFSYSGNPRDISLPYALFTSPNVVVQDGQYGYQNLFDAMLDSVHAAIDNTRIGYVEVVVSESGWPSDGGFGATYDNARVYLDNLVRRAKRGSPRRPSKPTETYIFAMFDENQKSPEIEKHFGLFSPNKQKKYPFGFGGKRDEEVFIDDFNATISLKSDITAESSLLESKFALWRVIHTRRVPRNLTGPGHGYSRIPVTEPLERNASWILWRFRVSVEWIRALESASLVESVTHLNMALQKYVPSGNAPSGNMKHLSFSSKVPKKAELDEANKNHDMDVDVDLREVYFLIMHFLSAGPCHKTYLQFWNELIEHQLLPRRYHAWYSRTAARSGDEDDDGLSCPLNYNMLVERYSHIEKDHLVKLLKQLLLNTASPSLGMNLGNAPNAADVPTLLGSGSFSLLSFDRDKMKEIKRPPSHMRWPHMKANQVHGLNLRELGGGFPRHHRAPSIRAACYAIAKPSTMVQKMQNIKRLRGHRNAVYCAIFDRSGRYVITGSDDRLVKVWSMETAYCLASCRGHDGDITDLAVSSNNALVASSSNDCVIRVWRLPDGLPISVLRGHTGAVTAIAFSPRPNAVYQLLSSSDDGTCRIWDARYTQSSPRLYVPRPPDSVIGKSSGPSSSTLPQSHQIFCCAFNANGTVFVTGSSDNLARVWNACKLSMDDTDQPNHEIDVLSGHENDVNYVQFSGCAVASRFSTAETWKEENIPKFKNSWLNHDNIVTCSRDGSAIIWIPKSRRSHGKSGRWTRAYHLRVPPPPMPPQPQRGGPRQRILPTPRGVNMIVWSLDNRFVLAAIMDCRICVWNASDGSLVHSLTGHTESTYVLDVHPFNPRIAMSAGYDGRTIVWDIWEGMPIRIYEISRFKLVDGKFSPDGTSIILSDDVGQLYILSTGQGESQKDAKYDQFFLGDYRPLIQDTHGNVLDQETQIVPYRRNLQDLLCDSAMIPYPEPYQSEFQQRRLGALGLEWRPSSLKLAVGPDFSLDPDYHMLPLADLDLLTEPLPEFIDAMEWEPEVEVFSDDTDSEYNVTEDFSSRGEKGCSSSNASGDSGCSTDNSDGEETHMDSIRRSKRKKQKIETEIMTSSGRRVKRRNLDECDGNTFGSSRSRKGKSGQKTSRRKSSKSKSSRPQRAAARNALHLFSKITGTPTDGEEDSLVGDFSDSESTLQESNIDSDESGETLQNDQLNCSKGKEISYCESEDTKSHELTGTHVNSMNKRRLVLKLPIREISKPANEFDYQAELVGSSSKTAQEATDFIMNKPSSKDSGYYSGSTSYPTVERTDQVIDHVDMLGEIRWGMVRARSSKPLRVGETVPSDAETCHHDEKENVVSTGHEKEDKNFSPLTPDLEIQNDDSLMEINEICDGTTSQPFNPTQKAEEITASSNCRDNDESLISAYMIPQDTVPASISYGRVDQLPEPNIGFPSVSTKLRSKRGSRDPESPSKHETKSSMLKNSACSGDDNNNFNNEYVVVDDNTKVTCNQGDNGTQEIEPRIRQNSTSHDFLEPHSQRDKMYKAVYRRSRSHRTVTNLADSSGPGESTSNGSNSTLNAAADFNNGTNEAIHTNGPLELEPTTCDPNNEKNNLRVHGNGLVKSPQNVSTSGEQFTEEERGSNSKLTVGLRSTRSRRSSYNIHEASPVNKRKSLQSATKGSWLLLSTHEEGCRYIPQQGDEVVYLRQ 1880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca08g01752 1880 Gene3D - 976 1110 IPR015943 GO:0005515
Cca08g01752 1880 MobiDBLite consensus disorder prediction 1774 1830 - -
Cca08g01752 1880 ProSiteProfiles Trp-Asp (WD) repeats profile. 724 765 IPR001680 GO:0005515
Cca08g01752 1880 MobiDBLite consensus disorder prediction 1620 1666 - -
Cca08g01752 1880 ProSitePatterns Trp-Asp (WD) repeats signature. 1041 1055 IPR019775 -
Cca08g01752 1880 Pfam WD domain, G-beta repeat 1015 1054 IPR001680 GO:0005515
Cca08g01752 1880 Pfam WD domain, G-beta repeat 835 863 IPR001680 GO:0005515
Cca08g01752 1880 Pfam WD domain, G-beta repeat 720 755 IPR001680 GO:0005515
Cca08g01752 1880 Pfam WD domain, G-beta repeat 677 714 IPR001680 GO:0005515
Cca08g01752 1880 Pfam WD domain, G-beta repeat 762 801 IPR001680 GO:0005515
Cca08g01752 1880 Gene3D Glycosidases 33 348 - -
Cca08g01752 1880 PANTHER PH-INTERACTING PROTEIN-LIKE ISOFORM X1 458 1880 - -
Cca08g01752 1880 MobiDBLite consensus disorder prediction 1225 1387 - -
Cca08g01752 1880 MobiDBLite consensus disorder prediction 1722 1830 - -
Cca08g01752 1880 ProSiteProfiles Trp-Asp (WD) repeats profile. 1021 1055 IPR001680 GO:0005515
Cca08g01752 1880 Gene3D - 833 966 IPR015943 GO:0005515
Cca08g01752 1880 MobiDBLite consensus disorder prediction 1651 1666 - -
Cca08g01752 1880 Gene3D - 654 832 IPR015943 GO:0005515
Cca08g01752 1880 CDD WD40 678 1054 - -
Cca08g01752 1880 SMART WD40_4 973 1011 IPR001680 GO:0005515
Cca08g01752 1880 SMART WD40_4 717 756 IPR001680 GO:0005515
Cca08g01752 1880 SMART WD40_4 675 714 IPR001680 GO:0005515
Cca08g01752 1880 SMART WD40_4 825 863 IPR001680 GO:0005515
Cca08g01752 1880 SMART WD40_4 1014 1054 IPR001680 GO:0005515
Cca08g01752 1880 SMART WD40_4 875 940 IPR001680 GO:0005515
Cca08g01752 1880 SMART WD40_4 759 801 IPR001680 GO:0005515
Cca08g01752 1880 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 724 757 - -
Cca08g01752 1880 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 682 717 - -
Cca08g01752 1880 MobiDBLite consensus disorder prediction 1683 1707 - -
Cca08g01752 1880 MobiDBLite consensus disorder prediction 1683 1697 - -
Cca08g01752 1880 Pfam Glycosyl hydrolases family 17 34 345 IPR000490 GO:0004553|GO:0005975
Cca08g01752 1880 MobiDBLite consensus disorder prediction 1726 1766 - -
Cca08g01752 1880 PANTHER WD REPEAT DOMAIN 9 458 1880 - -
Cca08g01752 1880 MobiDBLite consensus disorder prediction 1239 1259 - -
Cca08g01752 1880 MobiDBLite consensus disorder prediction 1315 1330 - -
Cca08g01752 1880 MobiDBLite consensus disorder prediction 1364 1387 - -
Cca08g01752 1880 ProSiteProfiles Trp-Asp (WD) repeats profile. 682 723 IPR001680 GO:0005515
Cca08g01752 1880 MobiDBLite consensus disorder prediction 1634 1650 - -
Cca08g01752 1880 ProSitePatterns Glycosyl hydrolases family 17 signature. 266 279 IPR000490 GO:0004553|GO:0005975
Cca08g01752 1880 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 766 801 - -
Cca08g01752 1880 ProSiteProfiles Trp-Asp (WD) repeats profile. 831 863 IPR001680 GO:0005515
Cca08g01752 1880 ProSiteProfiles Trp-Asp (WD) repeats profile. 766 810 IPR001680 GO:0005515
Cca08g01752 1880 MobiDBLite consensus disorder prediction 1260 1301 - -
Cca08g01752 1880 SUPERFAMILY WD40 repeat-like 673 1097 IPR036322 GO:0005515
Cca08g01752 1880 SUPERFAMILY (Trans)glycosidases 34 346 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca08g01752 Cca-Chr8 49487054 49522160 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca08g01752 40 352 Glycoside Hydrolase AT4G16260 62.540 2.68e-132 414
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca08g01752 K11797 - gmx:100818665 2510.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca08g01752 08 49487054 49522160 Cca08g01752 08 49487054 49522160 ECH