Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Car01g00945 ATGCATTCTCTCTATGCTAGAACCCATAAGTTCTCTTTGGCTTCACCACTGTTTCTTTTGGGACTATTCACAATAAATCTTATTCCCACGGCAGATGCTCAAATAGGAATATGTTATGGTATGATGGGAAACAATCTACCACCAGCAAACGAAGTAATAGATCTCTACAAAGCAAACAACATAAAAAGAATGAGACTTTATGATCCAAATCAAGCTGCTCTACAAGCATTGAGAAATTCAGGCATTGAACTCATTCTTGGTGTACCAAATTCAGATCTTCAAAGTCTAGCCACAAACAATGACATTGCAATTCAATGGGTACAAAAAAATGTACTTAACTTCTATCCAAGTGTCAAAATCAAATACATTGCAGTTGGTAATGAAGTGAGTCCAATTGGTGGCTCTTCTTGGCTTGCACAATATGTTCTACCCGCCACACAAAATATATATCAAGCAATAAGAGCTAAAAATCTTCATGACCAAATTAAAGTTTCAACTTCTATTGATATGACCCTTATTGGAAATTCTTTTCCTCCATCTAAAGGTTCATTTAGAAGTGATGTGAGGTCTTATTTAGATCCTTTTATTGGTTACTTGGTATATGCGGGTGCACCTTTACTTGTTAATGTTTACCCTTATTTTAGCTATGTTGGTAACCCACGTGATATATCTCTACCTTATGCTCTTTTCACCTCCCCAAATGTTATGGTACAAGATGGTCAATATGGGTACCAAAATTTGTTTGATGCTATGTTGGATTCGGTACATGCGGCCCTTGATAATACCGGAATCGGTTGGGTGAATGTCGTTGTGTCGGAGAGTGGGTGGCCGTCGGATGGAGGGTCGGCTACTTCGTATGATAACGCGCGTATTTATCTTGATAATTTGATTCGTCATGTTGGTAAAGGTACTCCAAGAAGGCCTTGGGCTACCGAAACTTATATTTTTGCTATGTTTGATGAGAATCAAAAGAGTCCGGAATTAGAAAAACATTTTGGAGTGTTTAATCCTAATAAACAAAAGAAATATCCGTTTGGATTTGGTGGAGAAAGAAGGAATGGAGAAATTGTCAACGATGACTTCAATGCAACTACGGTTTCTCTTAAGAGTGATATGTAA 1119 0.3753 MHSLYARTHKFSLASPLFLLGLFTINLIPTADAQIGICYGMMGNNLPPANEVIDLYKANNIKRMRLYDPNQAALQALRNSGIELILGVPNSDLQSLATNNDIAIQWVQKNVLNFYPSVKIKYIAVGNEVSPIGGSSWLAQYVLPATQNIYQAIRAKNLHDQIKVSTSIDMTLIGNSFPPSKGSFRSDVRSYLDPFIGYLVYAGAPLLVNVYPYFSYVGNPRDISLPYALFTSPNVMVQDGQYGYQNLFDAMLDSVHAALDNTGIGWVNVVVSESGWPSDGGSATSYDNARIYLDNLIRHVGKGTPRRPWATETYIFAMFDENQKSPELEKHFGVFNPNKQKKYPFGFGGERRNGEIVNDDFNATTVSLKSDM 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Car01g00945 372 ProSitePatterns Glycosyl hydrolases family 17 signature. 267 280 IPR000490 GO:0004553|GO:0005975
Car01g00945 372 Gene3D Glycosidases 34 348 - -
Car01g00945 372 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE B 23 354 - -
Car01g00945 372 Pfam Glycosyl hydrolases family 17 35 345 IPR000490 GO:0004553|GO:0005975
Car01g00945 372 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 23 354 IPR044965 GO:0004553|GO:0005975
Car01g00945 372 SUPERFAMILY (Trans)glycosidases 35 346 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Car01g00945 Car-Chr1 8782890 8786288 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Car01g00945 41 351 Glycoside Hydrolase AT4G16260 63.694 1.75e-140 400
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Car01g00945 - - ccaj:109791097 610.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Car01g00945 01 8782890 8786288 Car01g00945 01 8782890 8786288 ECH