Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g0067 ATGGCCTCTCACTTCTCCAGAAACCAGAGGTTCTCATTTGCTGCTTTGCTTCTTCTTTTTGAACTATTCGCAGTAAACCTTATCACAGCAGATGCGCAGATTGGTGTGTGTTACGGCATGATGGGCAACAATCTACCAGCAGCTAATGAAGTTATAAGTCTTTACAGATCAAACAACATAAGAAGAATGAGACTTTACGATCCCAATCAAGCTGCTCTACAAGCCCTGAGAAATTCAGGAATTGAACTCATTCTTGGAGTGCCAAACTCTGATCTTCAGGGTCTTGCCACGAATGCTGATAATGCTCGTCAATGGGTGCAAAGGAACGTGTTGAATTTTTGGCCAAGTGTAAGAATAAAGTACATAGCAGTTGGAAACGAAGTGAGTCCTGTTGGAGGGTCCTCTTGGTATGCACAGTTTGTTCTACCTGCTGTCCAAAATGTATACCAAGCTATAAGGGCACAAGGTCTTCATGATCAAATCAAGGTTTCAACAGCCATTGACATGACCCTAATAGGAAACTCCTACCCCCCATCACAGGGTTCCTTCAGGGGTGATGTTAGGTCATACTTAGACCCTATAATAGGGTACCTGCTGTATGCAGGTGCACCTTTACTGGTCAATGTGTACCCTTATTTTTCTTACTATGGTAATCCTCGTGACATATCACTTCCTTATGCTCTTTTCACTGCACCCAATGTTGTGGTGTGGGATGGCCAATATGGGTACCAGAATTTGTTTGATGCTATGTTGGATTCAGTGCATGCAGCCATTGATAATACTAGGATTGGTTATGTTGAGGTTGTTGTGTCTGAGAGCGGGTGGCCCTCGGGTGGAGATTTTGGTGCCTCGTACGACAATGCACGTGTGTACTTGGATAATTTGGTTCGTCGTGCTGGTAGAGGAAGCCCTAGAAGGCCTTCAAAACCCACAGAGATTTATATCTTTGGCATGTTCGATGAGAATGGAAAGAGTCCAGAGATAGAGAAACATTTTGGACTCTTTAATCCCAACAAACAAAAGAAATACCCCTTTGGATTTGGTGGCAAAAGGGATCGGAAGATTGTTATGGATGATTTCAATGCAACAAATCCCCTTAAGAGTGACATGTAA 1113 0.4322 MASHFSRNQRFSFAALLLLFELFAVNLITADAQIGVCYGMMGNNLPAANEVISLYRSNNIRRMRLYDPNQAALQALRNSGIELILGVPNSDLQGLATNADNARQWVQRNVLNFWPSVRIKYIAVGNEVSPVGGSSWYAQFVLPAVQNVYQAIRAQGLHDQIKVSTAIDMTLIGNSYPPSQGSFRGDVRSYLDPIIGYLLYAGAPLLVNVYPYFSYYGNPRDISLPYALFTAPNVVVWDGQYGYQNLFDAMLDSVHAAIDNTRIGYVEVVVSESGWPSGGDFGASYDNARVYLDNLVRRAGRGSPRRPSKPTEIYIFGMFDENGKSPEIEKHFGLFNPNKQKKYPFGFGGKRDRKIVMDDFNATNPLKSDM* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g0067 370 Gene3D Glycosidases 33 348 - -
Vra5g0067 370 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE B 19 354 - -
Vra5g0067 370 Pfam Glycosyl hydrolases family 17 34 345 IPR000490 GO:0004553|GO:0005975
Vra5g0067 370 SUPERFAMILY (Trans)glycosidases 34 346 IPR017853 -
Vra5g0067 370 ProSitePatterns Glycosyl hydrolases family 17 signature. 266 279 IPR000490 GO:0004553|GO:0005975
Vra5g0067 370 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 19 354 IPR044965 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g0067 Vra-Chr5 507603 510031 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g0067 40 356 Glycoside Hydrolase AT4G16260 63.009 2.36e-143 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g0067 - - ccaj:109791097 664.07