Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lja6g2311 ATGTCTTCCTTCACTAGAACCCAGTGCTTCTCATTGGCTACCCTCCTCCTTCTATTGACAACAAATCTTCACATTGCAGATGCTCAAATAGGTGTTTGTTATGGCATGATGGGCAACAACCTCCCATCGGCAAACGAAGTTGTTGCTCTTTACAAATCAAACAACATCCGGAGAATGCGCCTCTATGATCCAAACCAAGCAGCCCTCCAAGCCCTTCGAGACTCCGGTATCGAGCTCATCCTCGGTGTTCCCAACTCCGACCTCCAAAGCCTCGCCACCAACGCCGACAACGCACGCAACTGGGTGCAGAGAAACGTCCTCAACTTCTGGCCAAGCGTTAGGATCAAGTACATCGCGGTCGGCAATGAAGTGAGCCCTGTCGGAGGCGCCCCAACCCAATGGATGGCACAATATGTTCTCCCTGCCACCCAAAACATATACCAAGCCATAAGAGCACAGGGTCTCCATGACCAAATCAAGGTCACAACCGCAATTGACACGACCCTCATTGGAAACTCTTACCCTCCATCACAAGGATCCTTCAGGAGTGATGTGAGGTCCTACCTTGACCCTTTCATAGGCTACTTGGTCTATGCAGGAGCACCTCTACTTGTCAATGTGTACCCTTACTTCAGCCATATTGGTAACCCACGTGACGTTTCACTTTCCTACGCGCTCTTCACATCCCCAAACATCGTCGCACAGGATGGCCAATACGGGTACCAGAACCTGTTTGATGCAATGCTTGACGCAGTTCATGCAGCAATTGATAACACCAAGATTGGTTATGTGGAGGTTGTTGTGTCTGAGAGCGGGTGGCCTTCCGATGGAGGCTCCGCCACGTCATATGACAACGCGAGAATCTACCTTGATAATTTGATTCGTCACGTTGGTAGAGGTACTCCGAGGAGGCCAAACAAGCCTACAGAGACTTACATTTTTGCCATGTTTGATGAGAATCAGAAGAGCCCTGAATATGAGAAGCATTTTGGGTTGTTCTCTGCTAACAAACAAAAGAAGTATCCATTTGGATTTGGTGGAGAAAGGAGATGGGGAGTTTTGGGTGATGAGTTCAATGCAACCTCCACCGTTTCCCTTAAGAGTGACATGTAA 1113 0.4879 MSSFTRTQCFSLATLLLLLTTNLHIADAQIGVCYGMMGNNLPSANEVVALYKSNNIRRMRLYDPNQAALQALRDSGIELILGVPNSDLQSLATNADNARNWVQRNVLNFWPSVRIKYIAVGNEVSPVGGAPTQWMAQYVLPATQNIYQAIRAQGLHDQIKVTTAIDTTLIGNSYPPSQGSFRSDVRSYLDPFIGYLVYAGAPLLVNVYPYFSHIGNPRDVSLSYALFTSPNIVAQDGQYGYQNLFDAMLDAVHAAIDNTKIGYVEVVVSESGWPSDGGSATSYDNARIYLDNLIRHVGRGTPRRPNKPTETYIFAMFDENQKSPEYEKHFGLFSANKQKKYPFGFGGERRWGVLGDEFNATSTVSLKSDM* 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lja6g2311 370 Pfam Glycosyl hydrolases family 17 30 343 IPR000490 GO:0004553|GO:0005975
Lja6g2311 370 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE B 20 352 - -
Lja6g2311 370 ProSitePatterns Glycosyl hydrolases family 17 signature. 264 277 IPR000490 GO:0004553|GO:0005975
Lja6g2311 370 Gene3D Glycosidases 29 346 - -
Lja6g2311 370 SUPERFAMILY (Trans)glycosidases 30 343 IPR017853 -
Lja6g2311 370 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 20 352 IPR044965 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lja6g2311 Lja-Chr6 52051627 52053735 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lja6g2311 36 349 Glycoside Hydrolase AT4G16260 61.709 1.87e-141 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lja6g2311 - - ccaj:109791097 610.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lja6g2311 6 52051627 52053735 Lja6g2311 6 52051627 52053735 ECH