Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu1g1244 ATGCCTTCTCTCTTCGCTAGAAACCAGAGGTTCTCATTCGCTGCTTTCCTGCTTCTTTTGGAACTATTGACAGTAAACCTTCGCATGGCAGATGCTCAAATTGGCGTGTGTTATGGCATGATGGGCAACAATCTACCACCGGCAAACGAAGTTGTAGATCTTTACAGATCAAACAACATAAGGAGAATGAGACTCTATGATCCTAATCAAGCTGCTCTACAAGCACTTCGAAATTCGGGCATTGAACTCATTCTTGGGGTGCCCAACTCCGACCTTCAAGGCCTTGCCACCAACGCTGACACTGCACGTCAATGGGTGCAAAGAAACGTGTTGAACTTTTGGCCTAGTGTCAAAATCAAGTACGTGGCAGTTGGCAACGAAGTGAGTCCCGTTGGAGGCTCCTCTGGGCTTGCCCAATATGTTCTAAAAGCAATCCAAAACGTATACCAAGCTATAAGGGCTCAAGGCCTTCATGACCAAATCAAGGTTTCTACCGCTATTGACACGACCCTAATAGGAAACTCCTTCCCACCATCACAAGGTTCCTTCAGGGGTGATGTGAGGTCATACCTAGACCCCATAATTGGGTACTTGTTATATGCTAGAGCACCTTTACTAGCCAATGTGTACCCTTATTTTAGTTACTCTGGTAACCCCCGTGACATATCACTTCCCTATGCTCTTTTCACCTCACCAAATGTTGTGGTATGGGATGGTCAATATGGCTACCAAAATTTGTTTGATGCTATGTTGGATTCAGTGCATGCTGCAATTGATAACACTAGGATTGGTTATGTGGAGGTTGTTGTATCCGAGAGTGGGTGGCCGTCAGATGGAGGGTTTGGGGCCACTTATGACAACGCACGCGTGTACTTAGATAATTTGGTTCGTCGTGCTAGCAGAGGTAGCCCAAGAAGGCCTTCAAAGCCCACGGAGATTTATATATTTGCCATGTTCGATGAGAATCAAAAGAGTCCTGAGATAGAGAAACATTTTGGGCTCTTCAGTCCCAATAAGCAAAAGAAGTACCCATTTGGGTTTGGTGGGAAATGGAACGGGGAAGTTGTTATTGATGACTTCAATGCAACAGTTCCCCTTAAGAGTGACATGTAA 1113 0.4528 MPSLFARNQRFSFAAFLLLLELLTVNLRMADAQIGVCYGMMGNNLPPANEVVDLYRSNNIRRMRLYDPNQAALQALRNSGIELILGVPNSDLQGLATNADTARQWVQRNVLNFWPSVKIKYVAVGNEVSPVGGSSGLAQYVLKAIQNVYQAIRAQGLHDQIKVSTAIDTTLIGNSFPPSQGSFRGDVRSYLDPIIGYLLYARAPLLANVYPYFSYSGNPRDISLPYALFTSPNVVVWDGQYGYQNLFDAMLDSVHAAIDNTRIGYVEVVVSESGWPSDGGFGATYDNARVYLDNLVRRASRGSPRRPSKPTEIYIFAMFDENQKSPEIEKHFGLFSPNKQKKYPFGFGGKWNGEVVIDDFNATVPLKSDM 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu1g1244 370 ProSitePatterns Glycosyl hydrolases family 17 signature. 266 279 IPR000490 GO:0004553|GO:0005975
Ssu1g1244 370 Pfam Glycosyl hydrolases family 17 34 345 IPR000490 GO:0004553|GO:0005975
Ssu1g1244 370 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE B 22 354 - -
Ssu1g1244 370 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 22 354 IPR044965 GO:0004553|GO:0005975
Ssu1g1244 370 SUPERFAMILY (Trans)glycosidases 34 346 IPR017853 -
Ssu1g1244 370 Gene3D Glycosidases 33 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu1g1244 Ssu-Chr1 27536545 27538028 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu1g1244 40 356 Glycoside Hydrolase AT4G16260 63.009 4.94e-144 409
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu1g1244 - - ccaj:109791097 680.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu1g1244 1 27536545 27538028 Ssu1g1244 1 27536545 27538028 ECH