Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vivi4g02879 ATGATCATAAGCAACAATACCATAATGGCTTCTCTACTGCTAATCTTTGCTCTTTTTACAGTTCATCTTCGCTTGACCAGTGCTCAAATTGGTGTTTGCTATGGCATGTTGGGAAACAATCTACCATCACAACGTGAAGTGATAAATCTTTGCAAATCAAACAACATCAAAAGAATGAGGTTATATGATCCAAACCAAGCAGCTCTTGAAGCCCTTAGAAACTCTAACATTGAGCTAATGTTAGGTGTGCCGAATTCGGACCTACAAAACATTGCTACAAACAATGGAATTGCAATTCAATGGGTGCAAAAAAATGTACTAAACTTCTACCCTAGTGTAAAAATCAAATACATCGCGGTCGGCAATGAAGTTAATCCGGTCGGTGGATCATCTCAATTTGCGAAATTCGTTCTCCCCGCGATCCAAAATATTTACCAAGCTATAAGAGCAAAAGGTCTACAAGATCAAATCAAGGTTTCAACCGCTATCGACATGACTTTGATAGGAAACTCGTATCCGCCGTCTAAAGGTTCATTTAGAAGCGATGTAAGATCATATTTGGATCCAATTATAGGTTACTTAGTATATGCAAATGCACCTTTATTTGCAAATATTTACTCTTATTTTAGCTATTCTGGTAACCCTAAAGACATTTCACTTCCTTATGCATTATTCACTTCACCTAATGTTGTGGTTTGGGATGGTTCAAGAGGATACCAAAACCTATTTGATGCTTTGTTGGATTCATTACATGCTGCAATTGATAATACTGGAATTGGTTTTGTTAAGGTTGTTGTGTCTGAAAGTGGTTGGCCTTCAGATGGTGGATTTGCAGCTACCTATGATAATGCAAGAGTTTATCTTGATAATTTGATTAGGCATGTTAAAGGGGGGACTCCAATGAGGAATGGTCCTATTGAGACTTATATATTTGGTTTGTTTGATGAGAATCAGAAGAGTCCTGAGCTGGAGAAACATTTTGGAGTGTTTTATCCTAATAAACAGAAGAAGTATCCATTTGGGTTTGAGGGGAAAAGAGGTTGGGAGATTGAGGGTAGTATGTTTAATGTATCTTTTCCTCTTAAGAGTGACATTTAA 1098 0.3725 MIISNNTIMASLLLIFALFTVHLRLTSAQIGVCYGMLGNNLPSQREVINLCKSNNIKRMRLYDPNQAALEALRNSNIELMLGVPNSDLQNIATNNGIAIQWVQKNVLNFYPSVKIKYIAVGNEVNPVGGSSQFAKFVLPAIQNIYQAIRAKGLQDQIKVSTAIDMTLIGNSYPPSKGSFRSDVRSYLDPIIGYLVYANAPLFANIYSYFSYSGNPKDISLPYALFTSPNVVVWDGSRGYQNLFDALLDSLHAAIDNTGIGFVKVVVSESGWPSDGGFAATYDNARVYLDNLIRHVKGGTPMRNGPIETYIFGLFDENQKSPELEKHFGVFYPNKQKKYPFGFEGKRGWEIEGSMFNVSFPLKSDI 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vivi4g02879 365 SUPERFAMILY (Trans)glycosidases 30 341 IPR017853 -
Vivi4g02879 365 FunFam glucan endo-1,3-beta-glucosidase, basic 30 342 - -
Vivi4g02879 365 Gene3D Glycosidases 29 343 - -
Vivi4g02879 365 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 19 341 IPR044965 GO:0004553|GO:0005975
Vivi4g02879 365 ProSitePatterns Glycosyl hydrolases family 17 signature. 262 275 IPR000490 GO:0004553|GO:0005975
Vivi4g02879 365 Pfam Glycosyl hydrolases family 17 30 340 IPR000490 GO:0004553|GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vivi4g02879 Vivi-Chr4 135065319 135066741 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vivi4g02879 36 346 Glycoside Hydrolase AT4G16260 62.739 2.37e-141 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vivi4g02879 - - ccaj:109791097 560.451