Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g09486 ATGGCTTCTTTCTTTGCTGGAACCATAAGATTTTCTCTGGCTTCACTCTTTCTATTGGGATTGTTCACACTAAACCTTATTCCAACAGCAGATGCTCAAATAGGCATATGTTATGGCATGATGGGAAACAACCTCCCACCAGCAAACGAAGTTATAGCTCTCTACAAAGCAAACAACATCAAAAGAATGAGACTCTATGATCCCAACCAACCTGCTCTAAACGCATTAAGAGATTCAGGCATTGAACTCATTCTCGGTATACCAAATTCAGATCTCCAAACCCTAGCCACCAACCAGGACAGTGCACGCCAATGGGTACAAAGAAACGTTCTAAACTTCTACCCTAGGGTCAAAATCAAGTACATTGCAGTTGGTAACGAAGTGAGTCCAGTTGGAGGATCATCATGGCTAGCACAATACGTTCTCCCTGCAACACAAAATGTATACCAGGCCATAAGAGCTCAAGGTCTTCATGATCAAATCAAGGTTACAACAGCTATAGACATGACCCTAATTGGAAACTCTTTCCCTCCATCTAAAGGCTCTTTCAGAAGTGATGTTAGGTCATACCTAGATCCTTTCATTGGTTACTTGGTTTATGCAGGAGCACCTTTACTTGTTAATGTTTATCCTTATTTTAGCTATATCGGTAATCCACGCGATATATCACTACCTTATGCACTTTTCACTTCACCAAGTGTTATGGTGCAAGATGGACCAAATGGTTATCAGAACCTGTTTGATGCTATGTTGGATTCTGTGCATGCAGCTTTAGATAACACTGGAATTGGTTGGGTGAATGTTGTTGTTTCTGAGAGTGGTTGGCCTTCAGATGGAGGCGCTGCTACTTCGTATGATAATGCGCGTATTTATCTCGATAATTTGATTCGTCATGTTGGTAAAGGTACTCCAAGAAGGCCTTGGGCTACTGAGGCTTATATTTTTGCTATGTTTGATGAGAATCAAAAGAGTCCTGAATTGGAGAAACATTTTGGTGTGTTTTATCCTAATAAACAGAAGAAGTATCCATTTGGATTTGGTGGAGAAAGAAGGGATGGGGAGATTTTTGAGGGGGATTTCAATGGAACTGCTTCTCTTAAGAGTGATATGTAA 1113 0.407 MASFFAGTIRFSLASLFLLGLFTLNLIPTADAQIGICYGMMGNNLPPANEVIALYKANNIKRMRLYDPNQPALNALRDSGIELILGIPNSDLQTLATNQDSARQWVQRNVLNFYPRVKIKYIAVGNEVSPVGGSSWLAQYVLPATQNVYQAIRAQGLHDQIKVTTAIDMTLIGNSFPPSKGSFRSDVRSYLDPFIGYLVYAGAPLLVNVYPYFSYIGNPRDISLPYALFTSPSVMVQDGPNGYQNLFDAMLDSVHAALDNTGIGWVNVVVSESGWPSDGGAATSYDNARIYLDNLIRHVGKGTPRRPWATEAYIFAMFDENQKSPELEKHFGVFYPNKQKKYPFGFGGERRDGEIFEGDFNGTASLKSDM 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g09486 370 PANTHER GLUCAN ENDO-1,3-BETA-GLUCOSIDASE BG1-RELATED-RELATED 22 344 IPR044965 GO:0004553|GO:0005975
Vifa1g09486 370 Pfam Glycosyl hydrolases family 17 34 344 IPR000490 GO:0004553|GO:0005975
Vifa1g09486 370 SUPERFAMILY (Trans)glycosidases 34 345 IPR017853 -
Vifa1g09486 370 ProSitePatterns Glycosyl hydrolases family 17 signature. 266 279 IPR000490 GO:0004553|GO:0005975
Vifa1g09486 370 Gene3D Glycosidases 33 347 - -
Vifa1g09486 370 FunFam glucan endo-1,3-beta-glucosidase, basic 34 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g09486 Vifa-Chr1 1507489391 1507491206 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g09486 40 357 Glycoside Hydrolase AT4G16260 62.928 1.03e-141 403
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g09486 - - tpra:123885520 625.165
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g09486 1 1507489391 1507491206 Vifa1g09486 1 1507489391 1507491206 ECH