Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0569 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0570 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0571 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0572 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0573 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0574 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0575 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0576 . . Adu02g00547 Aed2g1806 Aev02g0038 Ahy12g0597 Ahy2g0505 Aip02g00602 . Amo12g0422 Amo02g0503 Apr10g0539 Arst2g00680 . . . Car07g03417 Cca01g01635 . Dod07g2216 . . Gma03g01106 . . Gso3g1008 . Lal7g0015 . . . Lan1g2093 Lapu10g00769 Lasa4g00022 . . . . Lja3g4654 Mal5g0035 Mepo1g04739 . . Mtr8g0031 . Phco1g02006 . . . Pumo7g01871 . Seca4g10109 Spst4g00809 Ssu2g0885 Sto1g2012 . Trre15g00034 . Vian9g01524 Vifa4g00032 Vimu9g01654 Viun10g00078 Vivi7g03269 Vra9g0679
Pvu10g0577 . . Adu02g00548 . Aev02g0037 Ahy12g0598 Ahy2g0506 Aip02g00603 . Amo12g0423 Amo02g0502 Apr10g0540 Arst2g00681 Bach6g00890 . Bva02g01621 . Cca01g01636 . Dod07g2217 . . . . . . Lal14g0084 . . Lan12g0129 . . . Lasa4g00023 . . . . . Mal5g0034 Mepo1g04740 . . Mtr8g0030 . . . . . Pumo7g01870 Rops4g00735 Seca4g10108 Spst4g00810 Ssu2g0886 . . Trre15g00033 . Vian9g01525 Vifa4g00030 Vimu9g01652 Viun10g00077 Vivi7g03267 Vra9g0678
Pvu10g0578 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu10g0569 Chr10 8676960 8680299 -
Pvu Pvu10g0570 Chr10 8682451 8683176 -
Pvu Pvu10g0571 Chr10 8692617 8696318 +
Pvu Pvu10g0572 Chr10 8782595 8788498 +
Pvu Pvu10g0573 Chr10 8848784 8851898 +
Pvu Pvu10g0574 Chr10 8867168 8869755 +
Pvu Pvu10g0575 Chr10 8879057 8883704 +
Pvu Pvu10g0576 Chr10 8899093 8908102 -
Adu Adu02g00547 Chr02 7098250 7102054 -
Aed Aed2g1806 Chr2 22721407 22742029 -
Aev Aev02g0038 Chr02 236664 240546 +
Ahy Ahy12g0597 Chr12 9575509 9579920 -
Ahy Ahy2g0505 Chr2 7087980 7092268 -
Aip Aip02g00602 Chr02 8996837 9000856 -
Amo Amo12g0422 Chr12 6911884 6916243 -
Amo Amo02g0503 Chr02 6291704 6296194 +
Apr Apr10g0539 Chr10 12463803 12474147 -
Arst Arst2g00680 Chr2 7026956 7031340 -
Car Car07g03417 Chr07 62238766 62245445 -
Cca Cca01g01635 Chr01 37496987 37509236 -
Dod Dod07g2216 Chr07 53887558 53893276 -
Gma Gma03g01106 Chr03 36012257 36024092 -
Gso Gso3g1008 Chr3 34530234 34538932 -
Lal Lal7g0015 Chr7 151805 157157 +
Lan Lan1g2093 Chr1 36438217 36444122 -
Lapu Lapu10g00769 Chr10 9537048 9546515 +
Lasa Lasa4g00022 Chr4 1668916 1670483 -
Lja Lja3g4654 Chr3 88596117 88602444 -
Mal Mal5g0035 Chr5 602720 609555 +
Mepo Mepo1g04739 Chr1 55413982 55420003 -
Mtr Mtr8g0031 Chr8 393080 399182 +
Phco Phco1g02006 Chr1 59786703 59797715 -
Pumo Pumo7g01871 Chr7 49696265 49705349 +
Seca Seca4g10109 Chr4 234698856 234707990 +
Spst Spst4g00809 Chr4 35321395 35332487 -
Ssu Ssu2g0885 Chr2 45199345 45206274 -
Sto Sto1g2012 Chr1 28516020 28526142 +
Trre Trre15g00034 Chr15 328136 333453 +
Vian Vian9g01524 Chr9 31414511 31419987 -
Vifa Vifa4g00032 Chr4 5335383 5338649 +
Vimu Vimu9g01654 Chr9 25753095 25760877 +
Viun Viun10g00078 Chr10 490678 497330 +
Vivi Vivi7g03269 Chr7 98101705 98105823 +
Vra Vra9g0679 Chr9 7738007 7746136 +
Pvu Pvu10g0577 Chr10 8911620 8915931 -
Adu Adu02g00548 Chr02 7108991 7111079 -
Aev Aev02g0037 Chr02 231271 235933 +
Ahy Ahy12g0598 Chr12 9585538 9587873 -
Ahy Ahy2g0506 Chr2 7099021 7101414 -
Aip Aip02g00603 Chr02 9006570 9008555 -
Amo Amo12g0423 Chr12 6921952 6924071 -
Amo Amo02g0502 Chr02 6282965 6284903 +
Apr Apr10g0540 Chr10 12488854 12492005 -
Arst Arst2g00681 Chr2 7038089 7040490 -
Bach Bach6g00890 Chr6 6977946 6981134 -
Bva Bva02g01621 Chr02 18924189 18927374 +
Cca Cca01g01636 Chr01 37558944 37563892 -
Dod Dod07g2217 Chr07 53894320 53897828 -
Lal Lal14g0084 Chr14 948915 949642 +
Lan Lan12g0129 Chr12 1500937 1505056 -
Lasa Lasa4g00023 Chr4 1677647 1680521 -
Mal Mal5g0034 Chr5 593186 595951 +
Mepo Mepo1g04740 Chr1 55422805 55425278 -
Mtr Mtr8g0030 Chr8 390363 392777 +
Pumo Pumo7g01870 Chr7 49669985 49675291 +
Rops Rops4g00735 Chr4 19466096 19470572 -
Seca Seca4g10108 Chr4 234693656 234696663 +
Spst Spst4g00810 Chr4 35333845 35337005 -
Ssu Ssu2g0886 Chr2 45208136 45212398 -
Trre Trre15g00033 Chr15 323945 326798 +
Vian Vian9g01525 Chr9 31424794 31427936 -
Vifa Vifa4g00030 Chr4 5166453 5169043 +
Vimu Vimu9g01652 Chr9 25747909 25751298 +
Viun Viun10g00077 Chr10 485292 488767 +
Vivi Vivi7g03267 Chr7 98096929 98099292 +
Vra Vra9g0678 Chr9 7732335 7735963 +
Pvu Pvu10g0578 Chr10 8936518 8940030 +