Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00032 ATGGCGATGCAACGCAGAACAAAGGCGGTACGGAGGTTGTTACAACAAATGGCAAACCACCACCATCAGCAGCGGCGGCAGCTCAGCCAAACTCATGACCATAACGTTTTGGTTGAAGGAAATGGATACTCCAGACTCGCACTTCTTAATCGACCCTCCGCTCTCAATGCTATTAACACCTCCATGGCTGGTAGACTGCATAAACTCTATACAAGTTGGGAAGATAACCCTGATATTGGTTTTCTAATGCTCAAGGGCAGTGGCCGGGCATTTGCCGCTGGCGGAGATATTGTCACGCTTTACCATTTTCTAAAACAAGGGAACATGGAAGCCTGCAAAGAATTTTTTAGAACAATATATAGTTTTATATACCTGCTAGGTACATATTTGAAGCCACATGTAGCTCTTCTGAATGGCATTACCATGGGTGGTGGGGCAGGAATTTCAATCCCTGGAACATTCCGAGTTGCAACAGACAAGACTGTTTTTGCTACCCCTGAAGTTCTTATTGGTTTCCATCCCGATGCTGCAGCATCTTTTTACCTTTCACGTCTACCTGGTCACTTAGGAGAGTACTTGGCTCTTACAGGGGAAAAGCTCAACGGAGTAGAGATGGTTGCCTGTGGCCTTGCTACACATTATTCACTACTTGCAAGGCTTCCATTAATTGAAGAGCAGCTGGGGAAATTGGTTACTGATGATCCATCTGTCATTGAAACCACTTTAGAACAGTATGGTGATCTTGTATATCCAGACAGCAGTAGTGTACTACAAAGGCTGGAAATTGTAGATAAATGCTTTTGCCATGACACAGTTGAAGAGATTGTTGATGCATTGGAAGTTGCGGCAAGTGAAACAAAAGAACCATGGTGCATTTCTACCCTAAATAGACTTAAAGAAGCTTCTCCATTGAGCTTGAAGGTTTCCTTAAGATCTATACGAGAAGGTAGATTTCAGACCCTTGATCAGTGCTTGTTGCGCGAGTACCGAATGACTTTACAAGCAATATCTAAACAAATATCTGGTGACTTCTGTGAGGGAGTGAGGGCACGCATGGTGGACAAGGACATGGCAGCAAAGTGGGATCCTCCAACCTTGGAAAAGGTGTCACAAGATATGGTGGATCAGTACTTCTTACCTCTAAGTGAATTTGAACCTGATCTAGAGCTTCCAACAAAATCCCGGGAAGCATTTTTTTAG 1200 0.4392 MAMQRRTKAVRRLLQQMANHHHQQRRQLSQTHDHNVLVEGNGYSRLALLNRPSALNAINTSMAGRLHKLYTSWEDNPDIGFLMLKGSGRAFAAGGDIVTLYHFLKQGNMEACKEFFRTIYSFIYLLGTYLKPHVALLNGITMGGGAGISIPGTFRVATDKTVFATPEVLIGFHPDAAASFYLSRLPGHLGEYLALTGEKLNGVEMVACGLATHYSLLARLPLIEEQLGKLVTDDPSVIETTLEQYGDLVYPDSSSVLQRLEIVDKCFCHDTVEEIVDALEVAASETKEPWCISTLNRLKEASPLSLKVSLRSIREGRFQTLDQCLLREYRMTLQAISKQISGDFCEGVRARMVDKDMAAKWDPPTLEKVSQDMVDQYFLPLSEFEPDLELPTKSREAFF 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00032 399 FunFam Probable 3-hydroxyisobutyryl-CoA hydrolase 2 30 394 - -
Vifa4g00032 399 SUPERFAMILY ClpP/crotonase 36 364 IPR029045 -
Vifa4g00032 399 CDD crotonase-like 36 213 - -
Vifa4g00032 399 PANTHER 3-HYDROXYISOBUTYRYL-COA HYDROLASE-RELATED 32 394 IPR032259 GO:0003860
Vifa4g00032 399 Pfam Enoyl-CoA hydratase/isomerase 46 378 IPR045004 -
Vifa4g00032 399 Gene3D - 30 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00032 Vifa-Chr4 5335383 5338649 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa4g00032 33 399 Acyl Lipid Metabolism Gene Families AT4G31810 64.324 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00032 K05605 - gmx:100801676 648.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa4g00032 4 5335383 5338649 Vifa4g00032 4 5335383 5338649 ECH