Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Spst4g00809 ATGCAGAGCAAAAGGGTAGGGTGGTGGTTCTTCGCAAAAGCAAAGCTTAGCCTTAATACATACCGAAACCTCTCTTCTTCTCAACACGTCGTTCTCGACAACCCCAATCACAGTCAGCAGGTTTTGGTCGAAGGAAATGGATGCTCCAGAATGGCCATTCTCAATAGACCCTCTGCTCTCAATGCTCTCAATACCAATATGGCGGCTACACTGCATAAACTTTATAGGAGTTGGGAAGATAACCCTGATATTGGTTTTGTAATGGTGAAGGGCAGTGGCCGAGCATTTGCAGCTGGTGGAGATATTGTTGCCCTTTACCATTTGATAAACAAAGGAAACATGGAGGCGTGTAAAGAATTTTTCAGAACGGCCTATAGTTTTATGTACCTGATTGGTACATATTTGAAGCCACATGTGGCACTTCTAAATGGCATTACCATGGGTGGTGGGGCTGGAATTTCAATCCCTGGTACATTCCGTGTTGCAACAGACAAAACTGATTACAATTGTGATCATATCATATTCTTAGCCAAGGAGGTGGAGCCCCTCATCTTTAGACCCCATCTTGCTAGGAACTATATGATTTTTGCTACCCCTGAAGTTCATATTGGATTCCACCCTGATGCTGCAGCATCTTTTTACCTTTCACATTTACCTGGTCATTTAGGTATGACTGAGGGCCTCTCTCTGGTGGTTTCCCCAAGGCCTAAGGTTGTTTTTAGCCTTCTCCACTATGCAGAGGGATTGGACTTCCTTGCTAGATTCCTAATTTCCGTTATGCATTTATTTGTATTTTCTGCTTTTGTGGATACCTTGAGAGTACGTGGCTCTGACAGGGGAAAAGCTCAACGGAGTAGAGATGTTTACCTGCGGGCTTGCTACACAAGGCTTCCTCTAATTGAAGAACAGTTGAGGAAATTGGTTACAGATGACCCATCTGTCATTGAAGCCACATTAGAACAATATGGTGATCTTGTACATCCAGACAGCAGTAGCGTACTACAAAGGATTGAAATTCTAGATAAATGCTTTTGCCATGACACAGTTGAAGAGATTGTTGATGCTATGAAAAATGCTGCAAGTGAAACAAAAGATGCATGGTGCATTTCTACCCTAAATAGACTGAAAGAGGCCTCTCCATTGAGCTTGAAGGTTGCCTTGAGATCTATACGGGAAGGTAGATTTCAGACCCTTGATCAATGCTTGTTGCGTGAGTACCGTATGACTTTACAAGCAATACATAGGCAAATATCAGGAGATTTCTGTGAGGGAGTGAGGGCACGCGTGGTGGACAAGGACTTTGCACCAAAGTGGGATCCTCCAACCTTGGAAAAGGTGTCTCAAGATATGGTGGATCATTACTTCTTACCTCTCAGTGAGTCGGAACCTGATCTGGAGCTGCCCACAAAAACTCGTGAAGCATTTCTATAG 1431 0.4368 MQSKRVGWWFFAKAKLSLNTYRNLSSSQHVVLDNPNHSQQVLVEGNGCSRMAILNRPSALNALNTNMAATLHKLYRSWEDNPDIGFVMVKGSGRAFAAGGDIVALYHLINKGNMEACKEFFRTAYSFMYLIGTYLKPHVALLNGITMGGGAGISIPGTFRVATDKTDYNCDHIIFLAKEVEPLIFRPHLARNYMIFATPEVHIGFHPDAAASFYLSHLPGHLGMTEGLSLVVSPRPKVVFSLLHYAEGLDFLARFLISVMHLFVFSAFVDTLRVRGSDRGKAQRSRDVYLRACYTRLPLIEEQLRKLVTDDPSVIEATLEQYGDLVHPDSSSVLQRIEILDKCFCHDTVEEIVDAMKNAASETKDAWCISTLNRLKEASPLSLKVALRSIREGRFQTLDQCLLREYRMTLQAIHRQISGDFCEGVRARVVDKDFAPKWDPPTLEKVSQDMVDHYFLPLSESEPDLELPTKTREAFL 476
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Spst4g00809 476 Gene3D - 291 471 - -
Spst4g00809 476 Gene3D - 35 173 - -
Spst4g00809 476 Gene3D - 183 231 - -
Spst4g00809 476 PANTHER 3-HYDROXYISOBUTYRYL-COA HYDROLASE-RELATED 37 470 IPR032259 GO:0003860
Spst4g00809 476 Pfam Enoyl-CoA hydratase/isomerase 50 166 IPR045004 -
Spst4g00809 476 Pfam Enoyl-CoA hydratase/isomerase 194 228 IPR045004 -
Spst4g00809 476 Pfam Enoyl-CoA hydratase/isomerase 295 455 IPR045004 -
Spst4g00809 476 CDD crotonase-like 41 221 - -
Spst4g00809 476 SUPERFAMILY ClpP/crotonase 39 166 IPR029045 -
Spst4g00809 476 SUPERFAMILY ClpP/crotonase 192 438 IPR029045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Spst4g00809 Spst-Chr4 35321395 35332487 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Spst4g00809 40 475 Miscellaneous Gene Families AT3G60510 52.495 2.09e-153 441
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Spst4g00809 K05605 - gmx:100801676 629.402
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Spst4g00809 4 35321395 35332487 Spst4g00809 4 35321395 35332487 ECH