Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo12g0423 ATGGTGGACCCACTTAGAGTTCTTGTCACCGGCGCCGCTGGGCAAATAGGGTATGCGCTGGTAGCAATGATAGCAAGAGGGGCAATGCTAGGGCCAAATCAGCCGGTGATTCTTCACATGCTTGACATTGAGCCAGCAGCGGAGGCATTGAAAGGAGTGAAGATGGAGCTGATGGACGCGGCGCTGCCGCTTCTAAGAGGGATTGTGGCTTCCACCGACGTGGCAGAGGCATGCAAGGGGGTCAACATTGCGGTCATGCTTGGTGGATTCCCGAGAAAAGAAGGGATGGAAAGAAAAGACGTCATGTCCAAGAATGTGTCCATATACAAGGCGCAGGCGTCCGCGCTTGAGAAGCACGCCGCCGCCGATTGCAAGGTGCTGGTGGTGGCCAATCCGGCCAACACCAACGCTCTCATACTCAAGGAGTTCGCTCCGTCCATTCCTGACAAGAACATCACTTGCCTTACTAGGCTTGACCACAATAGAGCCCTCGCTCAGATCTCTGAGAGGACGAAGGTTCATATCACCGATGTCAAGAATGTCATAATTTGGGGCAACCATTCCTCCACCCAGTATCCGGATGTGAACCATGCCACCGTTCAGGAGAAGCCTGTGAGGGAAGTTGTCGGCGACGATGAATGGCTCAACAACGACTTCATTGCCACCGTTCAGCAGCGAGGGGCTGCCATCATCAAAGCTAGGAAGCTCTCTAGTGCACTWTCCGCAGCAAGCTCTGCTTGTGATCATATACGTGACTGGGTTCTTGGTACTCCCAAGGGATCCTGGGTTTCAATGGGAGTATATTCCGATGGCTCATACGATATTCAACCTGGTCTAATTTACTCTTTTCCGGTTACATGTGAGAAAGGAGAATGGAGCATCGTACAGGGGCTAGAGATCGATGCATTCTCAAGGGAAAAGATGGATAAAACTGCCCAAGAGCTCATTGAGGAGAAAGAATTGGCTAAGTCATGTCTCAACTGA 984 0.5163 MVDPLRVLVTGAAGQIGYALVAMIARGAMLGPNQPVILHMLDIEPAAEALKGVKMELMDAALPLLRGIVASTDVAEACKGVNIAVMLGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAADCKVLVVANPANTNALILKEFAPSIPDKNITCLTRLDHNRALAQISERTKVHITDVKNVIIWGNHSSTQYPDVNHATVQEKPVREVVGDDEWLNNDFIATVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGSWVSMGVYSDGSYDIQPGLIYSFPVTCEKGEWSIVQGLEIDAFSREKMDKTAQELIEEKELAKSCLN* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo12g0423 327 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 156 323 IPR022383 GO:0016616
Amo12g0423 327 Gene3D - 155 327 IPR015955 GO:0003824|GO:0016616
Amo12g0423 327 PANTHER MALATE DEHYDROGENASE 3, CYTOPLASMIC 3 327 - -
Amo12g0423 327 Hamap Malate dehydrogenase [mdh]. 1 326 IPR010945 GO:0006108|GO:0016615
Amo12g0423 327 PIRSF Lac_mal_DH 1 325 IPR001557 GO:0016616|GO:0019752
Amo12g0423 327 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 154 IPR036291 -
Amo12g0423 327 TIGRFAM MDH_euk_cyt: malate dehydrogenase, NAD-dependent 6 323 IPR011274 GO:0006108|GO:0030060
Amo12g0423 327 CDD MDH_cytoplasmic_cytosolic 3 322 IPR011274 GO:0006108|GO:0030060
Amo12g0423 327 PANTHER MALATE DEHYDROGENASE 3 327 IPR010945 GO:0006108|GO:0016615
Amo12g0423 327 ProSitePatterns Malate dehydrogenase active site signature. 155 167 IPR001252 GO:0006108|GO:0016615
Amo12g0423 327 Gene3D - 3 154 - -
Amo12g0423 327 Pfam lactate/malate dehydrogenase, NAD binding domain 6 152 IPR001236 GO:0016491
Amo12g0423 327 SUPERFAMILY LDH C-terminal domain-like 156 326 IPR015955 GO:0003824|GO:0016616
Amo12g0423 327 TIGRFAM MalateDH-SF1: malate dehydrogenase 3 321 IPR010945 GO:0006108|GO:0016615
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo12g0423 Amo-Chr12 6921952 6924071 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo12g0423 K00025 - rcu:8265829 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0423 12 6921952 6924071 Amo12g0423 12 6921952 6924071 ECH
Amo12g0423 12 6921952 6924071 Amo02g0502 02 6282965 6284903 hybridization