Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo02g0502 ATGGAAATTCCTCTTTGGGAGATTGTGAATGTGGACCAAACACTCGTCCAAAACAAGATATGGGAGATTATCAACAACACAATCGCTCAAAAAATTCTTCTTGTTTTGATTTGTGTTTCTTTGTTTTGGAAGATGATTCGATACATGTGTGGTCTTCTCCATCAAGAGAAGGAACCCGTTACAGTATTGGTCACGGGTGCTGCAGGGCAAATAGGGTATGCACTGGTAGCAATGATAGCAAGAGGGGCAATGCTAGGGCCAAATCAGCCGGTGATTCTTCACATGCTTGACATTGAGCCAGCAGCGGAGGCATTGAAAGGAGTGAAGATGGAGCTGATGGACGCGGCGCTGCCGCTTCTAAGAGGGATTGTGGCTTCCACCGACGTGGCAGAGGCATGCAAGGGGGTCAACATTGCGGTCATGCTTGGTGGTTTCCCGAGAAAAGAAGGGATGGAAAGAAAAGACGTCATGTCCAAGAATGTGTCCATATACAAGGCGCAGGCGTCCGCGCTTGAGAAGCACGCCGCCGCCGATTGCAAGGTGCTGGTGGTGGCCAATCCGGCCAACACCAACGCTCTCATACTCAAGGAGTTTGCTCCGTCCATTCCTGACAAGAACATCACTTGCCTTACTAGGCTCGACCATAATAGAGCCCTCGCTCAGATCTCTGAGAGGACGAAGGTTCATATCACGGATGTCAAGAATGTTATCATTTGGGGCAACCATTCCTCCACCCAGTATCCGGATGTGAACCATGCCACCGTTCAGGAGAAGCCTGTGAGGGAAGTTGTCGGCGACGATGAATGGCTCAACAACGACTTCATTGCCACCGTTCAGCAGCGAGGGGCTGCCATCATCAAAGCTAGGAAGCTCTCTAGTGCACTWTCCGCAGCAAGCTCTGCTTGTGATCATATACGTGACTGGGTTCTTGGTACTCCCAAGGGATCCTGGGTTTCAATGGGAGTATATTCCGATGGCTCATACGATATTCAACCTGGTCTAATTTACTCTTTTCCGGTTACATGTGAGAAAGGAGAATGGAGCATCGTACAGGGGCTAGAGATCGATGCATTCTCAAGGGAAAAGATGGATAAAACTGCCCAAGAGCTCATTGAAGAGAAAGAATTGGCTAAGTCATGTCTCCACTGA 1149 0.4909 MEIPLWEIVNVDQTLVQNKIWEIINNTIAQKILLVLICVSLFWKMIRYMCGLLHQEKEPVTVLVTGAAGQIGYALVAMIARGAMLGPNQPVILHMLDIEPAAEALKGVKMELMDAALPLLRGIVASTDVAEACKGVNIAVMLGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAADCKVLVVANPANTNALILKEFAPSIPDKNITCLTRLDHNRALAQISERTKVHITDVKNVIIWGNHSSTQYPDVNHATVQEKPVREVVGDDEWLNNDFIATVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGSWVSMGVYSDGSYDIQPGLIYSFPVTCEKGEWSIVQGLEIDAFSREKMDKTAQELIEEKELAKSCLH* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo02g0502 382 SUPERFAMILY LDH C-terminal domain-like 211 381 IPR015955 GO:0003824|GO:0016616
Amo02g0502 382 PIRSF Lac_mal_DH 56 380 IPR001557 GO:0016616|GO:0019752
Amo02g0502 382 TIGRFAM MalateDH-SF1: malate dehydrogenase 57 376 IPR010945 GO:0006108|GO:0016615
Amo02g0502 382 PANTHER MALATE DEHYDROGENASE 3, CYTOPLASMIC 39 381 - -
Amo02g0502 382 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 48 209 IPR036291 -
Amo02g0502 382 Pfam lactate/malate dehydrogenase, NAD binding domain 61 207 IPR001236 GO:0016491
Amo02g0502 382 Hamap Malate dehydrogenase [mdh]. 56 381 IPR010945 GO:0006108|GO:0016615
Amo02g0502 382 TIGRFAM MDH_euk_cyt: malate dehydrogenase, NAD-dependent 62 378 IPR011274 GO:0006108|GO:0030060
Amo02g0502 382 Gene3D - 57 209 - -
Amo02g0502 382 Gene3D - 210 382 IPR015955 GO:0003824|GO:0016616
Amo02g0502 382 CDD MDH_cytoplasmic_cytosolic 58 377 IPR011274 GO:0006108|GO:0030060
Amo02g0502 382 PANTHER MALATE DEHYDROGENASE 39 381 IPR010945 GO:0006108|GO:0016615
Amo02g0502 382 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 211 378 IPR022383 GO:0016616
Amo02g0502 382 ProSitePatterns Malate dehydrogenase active site signature. 210 222 IPR001252 GO:0006108|GO:0016615
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo02g0502 Amo-Chr2 6282965 6284903 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo02g0502 K00025 - gmx:100783188 597.816
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo12g0423 12 6921952 6924071 Amo02g0502 02 6282965 6284903 hybridization