Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Apr10g0539 ATGATGCAGAGCAAAAGGGTAGTGTGGTGGTTCCTCAGAAAGGCAAGGCTCAGCCTTAACGCACACAGAAACCTCTCTGCTTCTCAACATGTCATTCTCGATAACCACGATCACAGTCAGGTTTTGGTCGAAGGAAGTGGTTCCTCCAGAATGGCAATTCTCAATAGACCCTCTGCTCTTAATGCTCTCAACACCTCTATGGCGGTTAGACTGCATAAACTTTATAGGAGTTGGGAAGACAACCCTGATATTGGTTTTGTGATGGTGAAGGGCAGTGGCCGGGCATTTGCAGCTGGCGGAGATATTGTTGCCCTTTACCATTTGATAGACAAAGGGAACATGGAAGCCTGTAAAGAATTTTTTAGAACAATATATAGTTTTATATACCTGATAGTAATGAACTTCATGCAGGTGGCTCTTCTGAATGGCATTACCATGGGTGGTGGGGCAGGAATTTCAATCCCAGGGACTTTCCGGGTTGCAACAGACAAAACTATTTTTGCTACTCCTGAAGTTCATATTGGATTCCACCCTGATGCTGCAGCATCCTTTTACCTTTCACATTTACCTGGTCACTTAGGAGAATACTTGGCTCTAACAGGGGAAAAGCTCAATGGAGTAGAGATGGTTACCTGTGGGCTTGCTACACACTATACACTATGTGCAAGGCTTCCATTAATTGAAGAACAGCTGGGAAAATTGGTAACTGATGATCCATCCGTCATTGAAACCACTTTAGAACAGTATGGTGACCCTGTACACCCAGATAACAATAGTGTGCTACAAAGGATTGAAACTCTAAATAAATGCTTTTGCCATGACACAGTTGAAGAAATTGTTGATGCTTTGGAAAATGCGGCAAGTAAAACAAATGATGCTTGGTGTATTTCTACCCTAGATAGGCTAAAAGAAGCTTCTCCATTGAGCTTGAAGGTGTCCTTAAGATCTATACGAGAGGGTAGATTTCAGACCCTTGATCAGTGCCTTATGCGTGAGTACCGTATGACTTTACAAGCAATATCTAAGCATATATCTGGGGACTTCTGTGAGGGAGTGAGGGCACGCGTGGTGGACAAGGACTTAACTCCAAAGTGGTATCCTCCAACCTTGGAAAAGGTGTCTCAAGATATGGTGGATCAGTACTTCTTACCTCTGAGTGAAGTGGAACCTGATCTAGAGCTTCCTACAAAAAGTCGTGAAGCGTTTTTATAG 1212 0.4332 MMQSKRVVWWFLRKARLSLNAHRNLSASQHVILDNHDHSQVLVEGSGSSRMAILNRPSALNALNTSMAVRLHKLYRSWEDNPDIGFVMVKGSGRAFAAGGDIVALYHLIDKGNMEACKEFFRTIYSFIYLIVMNFMQVALLNGITMGGGAGISIPGTFRVATDKTIFATPEVHIGFHPDAAASFYLSHLPGHLGEYLALTGEKLNGVEMVTCGLATHYTLCARLPLIEEQLGKLVTDDPSVIETTLEQYGDPVHPDNNSVLQRIETLNKCFCHDTVEEIVDALENAASKTNDAWCISTLDRLKEASPLSLKVSLRSIREGRFQTLDQCLMREYRMTLQAISKHISGDFCEGVRARVVDKDLTPKWYPPTLEKVSQDMVDQYFLPLSEVEPDLELPTKSREAFL* 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Apr10g0539 403 Gene3D - 35 398 - -
Apr10g0539 403 PANTHER 3-HYDROXYISOBUTYRYL-COA HYDROLASE-RELATED 12 402 IPR032259 GO:0003860
Apr10g0539 403 SUPERFAMILY ClpP/crotonase 38 368 IPR029045 -
Apr10g0539 403 PANTHER 3-HYDROXYISOBUTYRYL-COA HYDROLASE-LIKE PROTEIN 1, MITOCHONDRIAL 12 402 - -
Apr10g0539 403 Pfam Enoyl-CoA hydratase/isomerase 50 382 IPR045004 -
Apr10g0539 403 CDD crotonase-like 54 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Apr10g0539 Apr-Chr10 12463803 12474147 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Apr10g0539 18 403 Acyl Lipid Metabolism Gene Families AT4G31810 59.591 3.41e-173 488
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Apr10g0539 K05605 - gmx:100801676 681.404
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Apr10g0539 10 12463803 12474147 Apr10g0539 10 12463803 12474147 ECH