Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0129 ATGGTGGCCACAGATCCAGTTAGAGTTCTGGTCACTGGTGCTGCTGGGCAAATTGGTTATGCTCTTGTTCCAATGATTGCAAGAGGAGTGATGCTGGGTCCAAATCAGCCAGTAATTCTGCACATGCTTGACATTGAACCAGCAGCAGATGCCTTAAAAGGGGTTAAGATGGAACTCATTGATGCTGCTTTTCCACTTCTTAGAGGTGTTGTTGCTACAACGGATGTTACTGAAGCTTGCAAAGGTGTAAACATTGCTGTTATGGTTGGTGGATTCCCAAGGAAAGAAGGAATGGAAAGAAAAGATGTGATGTCTAAAAATGTATCTATATACAAGGCTCAAGCTTCAGCATTGGAGCAACATGCTGCTTCAGATTGTAAGGTACTAGTGGTGGCAAATCCAGCAAACACCAATGCTCTAATATTGAAAGAATTTGCTCCTTCAATCCCAGAGAAAAACATAACTTGTCTTACAAGACTTGATCATAATAGAGCATTAGGCCAAATATCTGAAAGGGTAAATGTACATGTTAGTGATGTCAAAAATGTCATAATATGGGGAAATCACTCTTCAACACAATATCCAGATGTTAACCATGCAACTATCAACACCAGCAGTGGCCACAAGCCAGTTAAAGAACTAGTTTCTGATGACAATTGGGTAAAGACAGAGTTCATATCCATTGTTCAGCAACGTGGGGCAGCAATAATTAAAGCAAGGAAGCTGTCTAGTGCATTATCAGCAGCAAGTGCTGCTTGTGATCACATACGTGATTGGGTTCTAGGTACTCCAAAGGGGTCATGGGTATCAATGGGAGTGTATTCTGATGGATCTTATGGTATCCAACCTGGTCTCATTTACTCATTTCCTGTTACATGTGAAAAAGGAGATTGGAATATTGTACAAGGGCTGAAGATAGATGAATTCTCTAGGGAAAAGATGGATAAAACTGCAGAAGAACTCATTGAAGAGAAAACATTGGCTAAGTCATGCCTCAATTGA 1002 0.4072 MVATDPVRVLVTGAAGQIGYALVPMIARGVMLGPNQPVILHMLDIEPAADALKGVKMELIDAAFPLLRGVVATTDVTEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAASDCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERVNVHVSDVKNVIIWGNHSSTQYPDVNHATINTSSGHKPVKELVSDDNWVKTEFISIVQQRGAAIIKARKLSSALSAASAACDHIRDWVLGTPKGSWVSMGVYSDGSYGIQPGLIYSFPVTCEKGDWNIVQGLKIDEFSREKMDKTAEELIEEKTLAKSCLN* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0129 333 SUPERFAMILY LDH C-terminal domain-like 158 332 IPR015955 GO:0003824|GO:0016616
Lan12g0129 333 Pfam lactate/malate dehydrogenase, NAD binding domain 7 154 IPR001236 GO:0016491
Lan12g0129 333 Gene3D - 157 333 IPR015955 GO:0003824|GO:0016616
Lan12g0129 333 Gene3D - 4 156 - -
Lan12g0129 333 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 155 IPR036291 -
Lan12g0129 333 PIRSF Lac_mal_DH 3 330 IPR001557 GO:0016616|GO:0019752
Lan12g0129 333 CDD MDH_cytoplasmic_cytosolic 5 328 IPR011274 GO:0006108|GO:0030060
Lan12g0129 333 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 158 328 IPR022383 GO:0016616
Lan12g0129 333 Hamap Malate dehydrogenase [mdh]. 3 332 IPR010945 GO:0006108|GO:0016615
Lan12g0129 333 ProSitePatterns Malate dehydrogenase active site signature. 157 169 IPR001252 GO:0006108|GO:0016615
Lan12g0129 333 TIGRFAM MalateDH-SF1: malate dehydrogenase 5 327 IPR010945 GO:0006108|GO:0016615
Lan12g0129 333 PANTHER MALATE DEHYDROGENASE 2 333 IPR010945 GO:0006108|GO:0016615
Lan12g0129 333 PANTHER MALATE DEHYDROGENASE 3, CYTOPLASMIC 2 333 - -
Lan12g0129 333 TIGRFAM MDH_euk_cyt: malate dehydrogenase, NAD-dependent 8 329 IPR011274 GO:0006108|GO:0030060
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0129 Lan-Chr12 1500937 1505056 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0129 K00025 - gmx:100783188 584.334