Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu10g0559 . . Adu02g00544 Aed2g1804 . Ahy12g0590 Ahy2g0499 . . Amo12g0416 . Apr10g0534 . Bach6g00901 . Bva02g01604 Car07g03413 Cca01g01629 . Dod07g2212 . . . . . . . Lal7g0016 . . . Lan1g2092 Lapu10g01207 . . . . . Lja3g4650 . . . . . Phac10g00603 . . Psa4g5223 . Pumo7g01877 Rops4g00679 Seca4g10112 . Ssu2g0879 . . . Tsu08g00026 Vian9g01520 Vifa4g00037 . Viun10g00086 . .
Pvu10g0560 . . . Aed2g1805 Aev02g0041 Ahy12g0591 Ahy2g0501 Aip02g00599 . Amo12g0417 . Apr10g0535 . Bach6g00900 . Bva02g01605 Car07g03414 Cca01g01630 . Dod07g2213 . . Gma03g01100 Gma07g00999 Gso7g0936 Gso3g1003 . . . . . . Lapu10g00773 Lasa4g00091 . . . . Lja3g4651 Mal5g0043 Mepo1g04734 . . Mtr8g0036 Phac10g00604 Phco1g02001 . Psa4g5224 . Pumo7g01876 Rops4g00680 Seca4g10111 Spst4g00806 Ssu2g0880 . . . Tsu08g00025 Vian9g01521 Vifa4g00036 Vimu9g01658 Viun10g00084 Vivi7g03284 Vra9g0683
Pvu10g0561 Acco07g1242 Accr6g01737 Adu02g00545 . Aev02g0040 Ahy12g0595 Ahy2g0502 Aip02g00600 Alju05g0983 Amo12g0418 Amo02g0510 Apr10g0536 Arst2g00675 . Bisa06g1061 Bva02g01607 Car07g03415 Cca01g01633 Dere11g0863 Dod07g2214 Enph10g1232 Glsi07g1342 Gma03g01103 Gma07g00998 Gso7g0935 Gso3g1006 . . Lal19g0016 . Lan1g0947 . Lapu10g00772 Lasa4g00092 Lele37g0833 . Lele39g0581 . Lja3g4653 Mal5g0042 . . Mibi04g1263 Mtr8g0035 Phac10g00605 Phco1g02003 Prci12g1138 Psa4g5225 . Pumo7g01875 Rops4g00690 Seca4g10110 Spst4g00807 Ssu2g0881 Sto1g1833 . Trre15g00041 Tsu08g00024 Vian9g01522 Vifa4g00035 Vimu9g01657 Viun10g00080 Vivi7g03283 Vra9g0682
Pvu10g0562 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja3g4843 . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0563 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0564 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu2g0104 . . . . . . . . . .
Pvu10g0565 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco1g02004 . . . . . . . . . . . . . . . . . .
Pvu10g0566 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu2g0089 . . . . . . . . . .
Pvu10g0567 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu10g0568 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu10g0559 Chr10 8473049 8477136 +
Adu Adu02g00544 Chr02 7003053 7005446 +
Aed Aed2g1804 Chr2 22684242 22688603 +
Ahy Ahy12g0590 Chr12 9494890 9498641 +
Ahy Ahy2g0499 Chr2 6978893 6982724 +
Amo Amo12g0416 Chr12 6816426 6820380 +
Apr Apr10g0534 Chr10 12408054 12415822 +
Bach Bach6g00901 Chr6 7069373 7074061 -
Bva Bva02g01604 Chr02 18828102 18832203 +
Car Car07g03413 Chr07 62196135 62200359 +
Cca Cca01g01629 Chr01 37228251 37233644 +
Dod Dod07g2212 Chr07 53845560 53850244 +
Lal Lal7g0016 Chr7 158342 162536 -
Lan Lan1g2092 Chr1 36433654 36437712 +
Lapu Lapu10g01207 Chr10 15360882 15364782 -
Lja Lja3g4650 Chr3 88565552 88569103 +
Phac Phac10g00603 Chr10 7306704 7311051 +
Psa Psa4g5223 Chr4 445222853 445227661 +
Pumo Pumo7g01877 Chr7 49783736 49786935 -
Rops Rops4g00679 Chr4 17894962 17898912 +
Seca Seca4g10112 Chr4 234850895 234856171 -
Ssu Ssu2g0879 Chr2 44969911 44972876 +
Tsu Tsu08g00026 Chr08 259240 261908 -
Vian Vian9g01520 Chr9 31314850 31318140 +
Vifa Vifa4g00037 Chr4 6013049 6014105 -
Viun Viun10g00086 Chr10 565793 570205 -
Pvu Pvu10g0560 Chr10 8503366 8504597 +
Aed Aed2g1805 Chr2 22711535 22712644 +
Aev Aev02g0041 Chr02 266483 267160 -
Ahy Ahy12g0591 Chr12 9514836 9515743 +
Ahy Ahy2g0501 Chr2 7010051 7010776 +
Aip Aip02g00599 Chr02 8935147 8935989 +
Amo Amo12g0417 Chr12 6848064 6849029 +
Apr Apr10g0535 Chr10 12425416 12426174 +
Bach Bach6g00900 Chr6 7061665 7062456 -
Bva Bva02g01605 Chr02 18839883 18840890 +
Car Car07g03414 Chr07 62205924 62206722 +
Cca Cca01g01630 Chr01 37271367 37272242 +
Dod Dod07g2213 Chr07 53862041 53863080 +
Gma Gma03g01100 Chr03 35939208 35940020 +
Gma Gma07g00999 Chr07 11487695 11488833 -
Gso Gso7g0936 Chr7 11249454 11259341 -
Gso Gso3g1003 Chr3 34465615 34467006 +
Lapu Lapu10g00773 Chr10 9582405 9583271 -
Lasa Lasa4g00091 Chr4 3577488 3578141 +
Lja Lja3g4651 Chr3 88575943 88576986 +
Mal Mal5g0043 Chr5 770148 770810 -
Mepo Mepo1g04734 Chr1 55359404 55360117 +
Mtr Mtr8g0036 Chr8 464868 465673 -
Phac Phac10g00604 Chr10 7337384 7338706 +
Phco Phco1g02001 Chr1 59705868 59706743 +
Psa Psa4g5224 Chr4 445251050 445253027 +
Pumo Pumo7g01876 Chr7 49760630 49761618 -
Rops Rops4g00680 Chr4 17917188 17918066 +
Seca Seca4g10111 Chr4 234763945 234764706 -
Spst Spst4g00806 Chr4 35263947 35264804 +
Ssu Ssu2g0880 Chr2 45049400 45050206 +
Tsu Tsu08g00025 Chr08 252894 253641 -
Vian Vian9g01521 Chr9 31346257 31347048 +
Vifa Vifa4g00036 Chr4 5986841 5987515 -
Vimu Vimu9g01658 Chr9 25799025 25799807 -
Viun Viun10g00084 Chr10 543122 544133 -
Vivi Vivi7g03284 Chr7 98372928 98374294 -
Vra Vra9g0683 Chr9 7798511 7799655 -
Pvu Pvu10g0561 Chr10 8534006 8545951 -
Acco Acco07g1242 Chr07 21673805 21685334 +
Accr Accr6g01737 Chr6 52757514 52763786 +
Adu Adu02g00545 Chr02 7059064 7063701 -
Aev Aev02g0040 Chr02 245270 254829 +
Ahy Ahy12g0595 Chr12 9546108 9552022 -
Ahy Ahy2g0502 Chr2 7048413 7054627 -
Aip Aip02g00600 Chr02 8967936 8972783 -
Alju Alju05g0983 Chr05 22200847 22210348 -
Amo Amo12g0418 Chr12 6882430 6888059 -
Amo Amo02g0510 Chr02 6330911 6332883 +
Apr Apr10g0536 Chr10 12440620 12451459 -
Arst Arst2g00675 Chr2 6987001 6992876 -
Bisa Bisa06g1061 Chr06 37455490 37475274 +
Bva Bva02g01607 Chr02 18856646 18862678 -
Car Car07g03415 Chr07 62211712 62223819 -
Cca Cca01g01633 Chr01 37372166 37391961 -
Dere Dere11g0863 Chr11 16212830 16222013 +
Dod Dod07g2214 Chr07 53872812 53878623 -
Enph Enph10g1232 Chr10 17587490 17595066 -
Glsi Glsi07g1342 Chr07 23840065 23849360 +
Gma Gma03g01103 Chr03 35976234 35992566 -
Gma Gma07g00998 Chr07 11435944 11445133 +
Gso Gso7g0935 Chr7 11199199 11207984 +
Gso Gso3g1006 Chr3 34497039 34506197 -
Lal Lal19g0016 Chr19 101572 106557 +
Lan Lan1g0947 Chr1 20118529 20123941 -
Lapu Lapu10g00772 Chr10 9558861 9568321 +
Lasa Lasa4g00092 Chr4 3592222 3604557 -
Lele Lele37g0833 Chr37 18019812 18025072 +
Lele Lele39g0581 Chr39 5406538 5416544 -
Lja Lja3g4653 Chr3 88587809 88594974 -
Mal Mal5g0042 Chr5 739711 746644 +
Mibi Mibi04g1263 Chr04 31113130 31118335 +
Mtr Mtr8g0035 Chr8 449587 456794 +
Phac Phac10g00605 Chr10 7362729 7380211 -
Phco Phco1g02003 Chr1 59720318 59730481 -
Prci Prci12g1138 Chr12 17870586 17877063 -
Psa Psa4g5225 Chr4 445261040 445271718 -
Pumo Pumo7g01875 Chr7 49724286 49734093 +
Rops Rops4g00690 Chr4 18096823 18103888 +
Seca Seca4g10110 Chr4 234712546 234721079 +
Spst Spst4g00807 Chr4 35282728 35290860 -
Ssu Ssu2g0881 Chr2 45075863 45084221 -
Sto Sto1g1833 Chr1 26583502 26601471 +
Trre Trre15g00041 Chr15 373426 379517 +
Tsu Tsu08g00024 Chr08 240856 247520 +
Vian Vian9g01522 Chr9 31368929 31378471 -
Vifa Vifa4g00035 Chr4 5970970 5974737 +
Vimu Vimu9g01657 Chr9 25777868 25781119 +
Viun Viun10g00080 Chr10 512497 522839 +
Vivi Vivi7g03283 Chr7 98360881 98366811 +
Vra Vra9g0682 Chr9 7770178 7780403 +
Pvu Pvu10g0562 Chr10 8568461 8574233 +
Lja Lja3g4843 Chr3 90470714 90476087 +
Pvu Pvu10g0563 Chr10 8595794 8596857 -
Pvu Pvu10g0564 Chr10 8600367 8602193 +
Ssu Ssu2g0104 Chr2 6896478 6907046 +
Pvu Pvu10g0565 Chr10 8613084 8616535 +
Phco Phco1g02004 Chr1 59762447 59766617 +
Pvu Pvu10g0566 Chr10 8624322 8626384 +
Ssu Ssu2g0089 Chr2 6374174 6382303 +
Pvu Pvu10g0567 Chr10 8636338 8640216 +
Pvu Pvu10g0568 Chr10 8664723 8668986 +