Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun10g00077 ATGGAATTGGAAGCATTAGCATGGGACACTCAGGACTACACATTTCTTAAGAAAATTCTTCTTGTTTTGCTTTGTGTTATTTTGTTTTGCAAGATTGTTAGATACATGTTTGGTCTTCTCAAGGAAGAGAAGGAACCAATCACAGTATTGGTCACTGGTGCTGCAGGGCAAATTGGATATGCACTTGTTCCAATGATTGCAAGAGGGGCAATGCTGGGCCCAGATCAGCCTGTGATTCTGCACATGCTTGACATTGAACCAGCAGCAGAGGCCTTGAAAGGGGTGAAGATGGAGCTGGTTGATGCTGCTTTTCCGCTTCTTAAAGGTGTTGTTGCTACTACTGATGTTGTTGAAGCTTGCAAGAATGTGAACATTGCTGTGATGGTGGGTGGATTCCCCCGGAAGGAAGGAATGGAAAGAAAAGATGTGATGTCTAAAAATGTGTCAATTTACAAGGCTCAAGCTTCAGCACTGGAGCAAAATGCTGCTGCAGATTGTAAGGTGCTGGTAGTTGCCAATCCAGCAAACACCAATGCTCTCATTTTGAAAGAGTTTGCTCCTTCAATCCCTGACAAAAACATCACCTGTCTTACAAGACTTGATCACAATAGAGCCTTAGGCCAAATCTCTGAGAGACTCAATGTTCATGTCAGTGATGTGAAAAATGTCATCATTTGGGGCAATCACTCCTCAACCCAATATCCAGATGTCAACCATGCCACAGTCACTGCCAATGGCGCACAGAAGCCAGTCAGAGAATTAGTTGCTGATGATAACTGGCTAAACAGTGAGTTCATCACCACTGTTCAGCAACGTGGGGCTGCCATTATTAAAGCCAGAAAGCTGTCTAGTGCATTATCTGCAGCAAGTTCTGCATGTGATCACATTCGTGATTGGGTTCTAGGAACTCCTAAGGAATCATGGGTATCAATGGGAGTGTATTCTGATGGATCTTATGGTGTTCAACCTGGCCTCATATACTCTTTCCCTGTTACTTGTGAGAAAGGAGAATGGACCATTGTTAAGGATCTGAAGATTGATGAGTTCTCAAGGGATAAGATGGACAAAACGGCACAAGAGCTGGTTGAAGAGAAGGAATTGGCCAAATCATGCCTTAATTGA 1122 0.4349 MELEALAWDTQDYTFLKKILLVLLCVILFCKIVRYMFGLLKEEKEPITVLVTGAAGQIGYALVPMIARGAMLGPDQPVILHMLDIEPAAEALKGVKMELVDAAFPLLKGVVATTDVVEACKNVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQNAAADCKVLVVANPANTNALILKEFAPSIPDKNITCLTRLDHNRALGQISERLNVHVSDVKNVIIWGNHSSTQYPDVNHATVTANGAQKPVRELVADDNWLNSEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKESWVSMGVYSDGSYGVQPGLIYSFPVTCEKGEWTIVKDLKIDEFSRDKMDKTAQELVEEKELAKSCLN 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun10g00077 373 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 33 196 IPR036291 -
Viun10g00077 373 FunFam Malate dehydrogenase 197 373 - -
Viun10g00077 373 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 198 370 IPR022383 GO:0016616
Viun10g00077 373 NCBIfam malate dehydrogenase, NAD-dependent 49 369 IPR011274 GO:0006108|GO:0030060
Viun10g00077 373 PIRSF Lac_mal_DH 43 371 IPR001557 GO:0016616|GO:0019752
Viun10g00077 373 CDD MDH_cytoplasmic_cytosolic 45 368 IPR011274 GO:0006108|GO:0030060
Viun10g00077 373 SUPERFAMILY LDH C-terminal domain-like 198 372 IPR015955 GO:0003824|GO:0016616
Viun10g00077 373 Gene3D - 44 196 - -
Viun10g00077 373 Pfam lactate/malate dehydrogenase, NAD binding domain 49 194 IPR001236 GO:0016491
Viun10g00077 373 PANTHER MALATE DEHYDROGENASE 44 372 IPR010945 GO:0006108|GO:0016615
Viun10g00077 373 FunFam Malate dehydrogenase 44 196 - -
Viun10g00077 373 Gene3D - 197 373 IPR015955 GO:0003824|GO:0016616
Viun10g00077 373 NCBIfam malate dehydrogenase 44 367 IPR010945 GO:0006108|GO:0016615
Viun10g00077 373 ProSitePatterns Malate dehydrogenase active site signature. 197 209 IPR001252 GO:0006108|GO:0016615
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun10g00077 Viun-Chr10 485292 488767 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun10g00077 K00025 - gmx:100783188 632.098