Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vian9g01525 ATGACGATTGATTCTGTTGCACTTTCATTTCTTGTGGACTCAGTTATGATTGTCAGATACATGTTTGGTCTTCTCAAGGAAGAGAAGGAACCAATCACAGTATTGGTCACTGGTGGGCAAATTGGATATGCACTTGTTCCAATGATTGCAAGAGGGGCAATGCTGGGCCCAGATCAGCCTGTGATTCTGCACATGCTTGATATTGAACCAGCAGCAGAGGCCTTGAAAGGGGTGAAGATGGAGCTGGTTGATGCAGCTTTTCCACTTCTTAAAGGCATGTTTTCAAATACCAGTGTTGTTGCTACTACTGATGTTGTTGAAGCTTGCAAGAATGTGAACATTGCTGTGATGGTGGGTGGATTCCCCCGGAAGGAAGGAATGGAAAGAAAAGATGTGATGTCTAAAAATGTGTCAATTTACAAGGCTCAAGCTTCAGCACTGGAGCAAAATGCTGCAGCAGATTGTAAGGTGCTGGTGGTTGCCAATCCAGCAAACACCAATGCTCTCATTTTGAAAGAGTTTGCTCCTTCAATCCCTGAGAAAAACATCACCTGTCTTACAAGGCTTGATCACAACAGAGCCTTAGGCCAAATCTCTGAGAGACTCAATGTTCATGTCAGTGATGTAAAAAATGTCATCATTTGGGGCAATCACTCCTCAACCCAATATCCAGATGTTAACCATGCCACAGTCACTGCCAATGGAGCACAGAAGCCAGTCAGAGAATTAGTTGCTGATGATAACTGGCTAAACAGTGAGTTCATCACCACTGTTCAGCAACGTGGGGCTGCCATTATTAAAGCCAGAAAGCTGTCTAGTGCATTATCTGCAGCAAGTGCTGCCTGTGATCACATTCGTGACTGGGTTCTAGGAACTCCAAAGGAATCATGGGTATCAATGGGAGTGTATTCTGATGGATCTTATGGTGTTCAACCTGGTCTCATATACTCTTTCCCTGTTACTTGTGAGAAAGGAGATTGGACCATTGTTCAAGGTCTGAAGATTGATGAGTTCTCAAGGGATAAGATGGACAAAACGGCACAAGAGCTGGTTGAGGAGAAGGAATTGGCCAAATCATGCCTTAATTGA 1089 0.4399 MTIDSVALSFLVDSVMIVRYMFGLLKEEKEPITVLVTGGQIGYALVPMIARGAMLGPDQPVILHMLDIEPAAEALKGVKMELVDAAFPLLKGMFSNTSVVATTDVVEACKNVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQNAAADCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLNVHVSDVKNVIIWGNHSSTQYPDVNHATVTANGAQKPVRELVADDNWLNSEFITTVQQRGAAIIKARKLSSALSAASAACDHIRDWVLGTPKESWVSMGVYSDGSYGVQPGLIYSFPVTCEKGDWTIVQGLKIDEFSRDKMDKTAQELVEEKELAKSCLN 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vian9g01525 362 CDD MDH_cytoplasmic_cytosolic 30 357 IPR011274 GO:0006108|GO:0030060
Vian9g01525 362 ProSitePatterns Malate dehydrogenase active site signature. 186 198 IPR001252 GO:0006108|GO:0016615
Vian9g01525 362 NCBIfam malate dehydrogenase, NAD-dependent 34 358 IPR011274 GO:0006108|GO:0030060
Vian9g01525 362 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 20 185 IPR036291 -
Vian9g01525 362 Gene3D - 29 185 - -
Vian9g01525 362 FunFam Malate dehydrogenase 29 185 - -
Vian9g01525 362 FunFam Malate dehydrogenase 186 362 - -
Vian9g01525 362 PANTHER MALATE DEHYDROGENASE 29 361 IPR010945 GO:0006108|GO:0016615
Vian9g01525 362 Pfam lactate/malate dehydrogenase, NAD binding domain 32 183 IPR001236 GO:0016491
Vian9g01525 362 PIRSF Lac_mal_DH 28 360 IPR001557 GO:0016616|GO:0019752
Vian9g01525 362 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 187 359 IPR022383 GO:0016616
Vian9g01525 362 NCBIfam malate dehydrogenase 29 356 IPR010945 GO:0006108|GO:0016615
Vian9g01525 362 Gene3D - 186 362 IPR015955 GO:0003824|GO:0016616
Vian9g01525 362 SUPERFAMILY LDH C-terminal domain-like 187 361 IPR015955 GO:0003824|GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vian9g01525 Vian-Chr9 31424794 31427936 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vian9g01525 K00025 - gmx:100783188 590.112