Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gso3g1008 ATGATGATGCAGAGCAAAAGGGCAGGGTGGTGGTTGCTCAGAAAGGCAAAGGCAAAGCTGAGTCTTAACACTGACCGAAACCTCTCTTCTTCTCAACACCTCATTCTCGACAACCCCAATCTCAATCAGGTTTTGGTCGAAGGAAATGGTTTCTCCAGAATGGCCATTCTCAATAGACCCTCTGCTCTCAATGCTCTCAACACCAATATGGCGGCTACACTGCATAAACTTTATAGGAGCTGGGAAGAGGACCCTGATATTGGTTTTGTGATGCTCAAGGGCAGTGGCCGAGCATTTGCAGCTGGTGGAGATATTGTTGCGCTTTACCATTTGATAAACAAAGGGAACTTGGAAGCCTGTAAAGAATTTTTTAGAACGGCATATAGTTTTATGTACCTGATAGGTACATATTTGAAGCCACATGTTGCTCTTCTGAATGGCATTACCATGGGTGGTGGGGCTGGAATTTCAATCCCTGGGACATTTCGAGTTGCAACAGACAAAACTATTTTTGCTACCCCTGAAGTTCTTATTGGATTCCACCCTGATGCTGCAGCATCTTTTTACCTTTCACATTTACCTGGTCAATTAGGAGAATACTTGGCTCTGACTGGGGAAAAGCTCAACGGAGTAGAGATGGTTGCTTGTGGGCTTGCTACACACTATTCATCAAGTGCAAGGCTTCCTTTAATCGAAGAACAACTGGGGAAATTGGTTACTGATGACCCGTCTGTCATTGAAACTACTTTAGAACAGTATGGTGAGATTGTACATCTAGACAGCAGTAGCGTACTACAAAGGATTGAAGTTCTAGATAAATGCTTTTGCCATGACACAGTTGAAGAGATTGTTGATGCGATGGAAAATGCGGCAAGTGAAACAAATGATGCATGGTGCATTTCTACCCTAAATAAACTCAAAGAAGCTTCTCCATTGAGCTTGAAGGTTGCTTTGAGATCTATACGGGAAGGTAGATTTCAGACACTTGATCAATGCTTGTTGCGTGAGTACCGTATGACTTTACAAGCAATTCATAGGCAGATATCTGGGGACTTTTGTGAGGGAGTGAGGGCACGCGTGGTGGACAAGGACTTTGCACCAAAGTGGGATCCTCCAACCTTGGAAAAGGTGTCTCAAGATATGGTGGATCACTACTTCTTACCTCTGAGTGAATCTGAACCTGATCTAGAGCTGCCCACAAACAATCGTGAAGCATTTTTGTAG 1224 0.4379 MMMQSKRAGWWLLRKAKAKLSLNTDRNLSSSQHLILDNPNLNQVLVEGNGFSRMAILNRPSALNALNTNMAATLHKLYRSWEEDPDIGFVMLKGSGRAFAAGGDIVALYHLINKGNLEACKEFFRTAYSFMYLIGTYLKPHVALLNGITMGGGAGISIPGTFRVATDKTIFATPEVLIGFHPDAAASFYLSHLPGQLGEYLALTGEKLNGVEMVACGLATHYSSSARLPLIEEQLGKLVTDDPSVIETTLEQYGEIVHLDSSSVLQRIEVLDKCFCHDTVEEIVDAMENAASETNDAWCISTLNKLKEASPLSLKVALRSIREGRFQTLDQCLLREYRMTLQAIHRQISGDFCEGVRARVVDKDFAPKWDPPTLEKVSQDMVDHYFLPLSESEPDLELPTNNREAFL* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gso3g1008 407 Pfam Enoyl-CoA hydratase/isomerase 53 386 IPR045004 -
Gso3g1008 407 Gene3D - 39 403 - -
Gso3g1008 407 PANTHER 3-HYDROXYISOBUTYRYL-COA HYDROLASE-RELATED 14 406 IPR032259 GO:0003860
Gso3g1008 407 PANTHER 3-HYDROXYISOBUTYRYL-COA HYDROLASE-LIKE PROTEIN 1, MITOCHONDRIAL 14 406 - -
Gso3g1008 407 CDD crotonase-like 44 228 - -
Gso3g1008 407 SUPERFAMILY ClpP/crotonase 44 372 IPR029045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gso3g1008 Gso-Chr3 34530234 34538932 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gso3g1008 43 406 Miscellaneous Gene Families AT3G60510 64.781 0.0 513
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gso3g1008 K05605 - gmx:100801676 801.201