Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bva02g01621 ATGGCGACAGACCCACTTAGAGTCCTGGTTACTGGAGCTGCTGAGAAGGAACCTGTCACAGTGTTGATCACTGGTGCTGCAGGTCAAATTGGTTATGCCCTTGTTCCAATGATAGCAAGGGGGGCGATGCTAGGTCCTGATCAGCCCATAATTCTGCATATGCTTGATATAGAACCAGCAGCAGAGGCCTTGAAAGGGGTGAAGATGGAACTGATTGATGCTGCCTTTCCACTTCTTAAaggtgTCGTAGCCACTACAGATGTTGTTGAAGCTTGCAAGGGCGTCAATGTTGCTGTTATGGTGGGTGGATTCCCCCGGAAGGAaggaatggaaaggaaagatGTGATGTCTAAAAATGTTTCAATCTACAAGGCTCAAGCTTCAGCCTTGGAGCAGCATGCTGCTCCTGACTGCAAGGTGCTAGTGGTTGCCAATCCAGCCAACACCAATGCTCTCATCTTGAAAGAATTTGCACCTTCAATTCCAGAAAAGAACATCACTTGTCTTACACGACTTGATCATAACAGAGCTCTGGGCCAAATCTCTGAGCGGCTCAACGTTCATGTTGGTGATGTCAAGAATGTCATCATCTGGGGCAATCACTCCTCAACCCAATATCCAGATGTCAACCATGCAACTGTTACCACCAACGGCTCACAGAAACCTGTCAGAGAACTTGTTGCTGATGATAAATGGTTAAACAGTGAGTTCATCACCACTGTTCAGCAGCGTGGTGCAGCCATTATTAAAGCCAGGAAGTTGTCTAGTGCACTATCTGCTGCAAGTTCAGCTTGTGATCACATACGTGATTGGGTTCTTGGAACTCCTAAGGGAACATGGGTGTCAATGGGAGTCTATTCTGATGGCTCTTATGGTATCCAACCTGGTCTCATTTACTCTTTCCCTGTTACCTGTGAGAAAGGAGAATGGAAAATTGTACAAGGGCTCAAGATCGATCAGTTCTCAAGGGAAAAGATGGATAATACAGCACAAGAGCTCATTGAAGAGAAGTCATTGGCATATTCATGCCTCAATTG 1037 0.4503 MATDPLRVLVTGAAGQIGYALVPMIARGAMLGPDQPIILHMLDIEPAAEALKGVKMELIDAAFPLLKGVVATTDVVEACKGVNVAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAPDCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLNVHVGDVKNVIIWGNHSSTQYPDVNHATVTTNGSQKPVRELVADDKWLNSEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIQPGLIYSFPVTCEKGEWKIVQGLKIDQFSREKMDNTAQELIEEKSLAYSCLN 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bva02g01621 332 SUPERFAMILY LDH C-terminal domain-like 157 331 IPR015955 GO:0003824|GO:0016616
Bva02g01621 332 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 4 154 IPR036291 -
Bva02g01621 332 CDD MDH_cytoplasmic_cytosolic 4 328 IPR011274 GO:0006108|GO:0030060
Bva02g01621 332 ProSitePatterns Malate dehydrogenase active site signature. 156 168 IPR001252 GO:0006108|GO:0016615
Bva02g01621 332 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 157 325 IPR022383 GO:0016616
Bva02g01621 332 PANTHER MALATE DEHYDROGENASE 2 332 IPR010945 GO:0006108|GO:0016615
Bva02g01621 332 Pfam lactate/malate dehydrogenase, NAD binding domain 7 153 IPR001236 GO:0016491
Bva02g01621 332 PIRSF Lac_mal_DH 2 328 IPR001557 GO:0016616|GO:0019752
Bva02g01621 332 Gene3D - 156 332 IPR015955 GO:0003824|GO:0016616
Bva02g01621 332 Gene3D - 3 155 - -
Bva02g01621 332 TIGRFAM MalateDH-SF1: malate dehydrogenase 4 326 IPR010945 GO:0006108|GO:0016615
Bva02g01621 332 PANTHER MALATE DEHYDROGENASE 3, CYTOPLASMIC 2 332 - -
Bva02g01621 332 TIGRFAM MDH_euk_cyt: malate dehydrogenase, NAD-dependent 7 329 IPR011274 GO:0006108|GO:0030060
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bva02g01621 Bva-Chr2 18924189 18927374 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Bva02g01621 K00025 - tcc:18614398 610.527