Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Rops4g00735 ATGTTTGATCTTCTCAAAACAGAGAAGGAACCAGTCACTGTATTGGTCACCGGTGCTGCAGGACAAATTGGTTATGCACTTGTTCCAATGATTGCAAGAGGGATGATGCTAGGCCCAAATCAGCCTGTGATTCTACATATGCTTGATATTGAACCAGCAGCAGAGGCCTTAAAAGGGGTGAAGATGGAACTGATAGATGCTGCTTTCCCACTTCTTAGAGGTGTTGTTGCTACTACTGATGTTGTTGAAGCTTGCAAGGATGTTAACATTGCTGTCATGGTGGGTGGATTCCCTAGAAAGGAAGGAATGGAAAGAAAAGATGTGATGTCTAAAAATGTATCAATTTACAAGGCTCAAGCTTCAGCCCTGGAGCAGCATGCTGCTGCAGATTGTAAAGTGCTAGTGGTTGCCAATCCAGCAAATACTAATGCTCTCATTTTGAAAGAATTTGCTCCTTCAATCCCAGAGAAAAACATCACTTGTCTTACAAGACTTGATCACAATAGAGCACTAGGCCAAATCTCTGAGAGGCTAAATGTTCATGTTAGTGATGTAAAGAATGTCATCATTTGGGGCAATCACTCTTCAACACAATATCCAGATGTGAACCATGCAACTGTCACCACAAGTAATGCACAGAAGCCTGTCAGAGAATTAGTTGCTGATGATAAATGGCTAAACACTGAGTTCATCACCACTGTTCAGCAACGTGGGGCTGCCATTATTAAAGCCAGGAAGCTGTCTAGTGCATTATCAGCAGCAAGTGCTGCTTGTGATCACATACGTGATTGGGTTCTTGGTACTCCTAAGGGAACATGGGTATCAATGGGAGTGTATTCTGATGGATCTTATGGTATCCAACCTGGCCTAATTTACTCTTTTCCTGTTACATGCGAGAAAGGGGAGTGGAATATTGTACAAGGGCTCAAGATTGATCAATTCTCAAGGGATAAGATGGATAAGACGGCCCAAGAGCTCGTTGAGGAGAAGACATTGGCTAAGTCATGCCTCAATTGA 1017 0.4287 MFDLLKTEKEPVTVLVTGAAGQIGYALVPMIARGMMLGPNQPVILHMLDIEPAAEALKGVKMELIDAAFPLLRGVVATTDVVEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAADCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISERLNVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSNAQKPVRELVADDKWLNTEFITTVQQRGAAIIKARKLSSALSAASAACDHIRDWVLGTPKGTWVSMGVYSDGSYGIQPGLIYSFPVTCEKGEWNIVQGLKIDQFSRDKMDKTAQELVEEKTLAKSCLN* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Rops4g00735 338 NCBIfam malate dehydrogenase 9 332 IPR010945 GO:0006108|GO:0016615
Rops4g00735 338 Gene3D - 9 161 - -
Rops4g00735 338 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 163 334 IPR022383 GO:0016616
Rops4g00735 338 ProSitePatterns Malate dehydrogenase active site signature. 162 174 IPR001252 GO:0006108|GO:0016615
Rops4g00735 338 SUPERFAMILY LDH C-terminal domain-like 163 337 IPR015955 GO:0003824|GO:0016616
Rops4g00735 338 Gene3D - 162 338 IPR015955 GO:0003824|GO:0016616
Rops4g00735 338 FunFam Malate dehydrogenase 162 338 - -
Rops4g00735 338 CDD MDH_cytoplasmic_cytosolic 10 333 IPR011274 GO:0006108|GO:0030060
Rops4g00735 338 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 161 IPR036291 -
Rops4g00735 338 Coils Coil 337 338 - -
Rops4g00735 338 NCBIfam malate dehydrogenase, NAD-dependent 14 334 IPR011274 GO:0006108|GO:0030060
Rops4g00735 338 PIRSF Lac_mal_DH 8 335 IPR001557 GO:0016616|GO:0019752
Rops4g00735 338 FunFam Malate dehydrogenase 9 161 - -
Rops4g00735 338 Pfam lactate/malate dehydrogenase, NAD binding domain 13 159 IPR001236 GO:0016491
Rops4g00735 338 PANTHER MALATE DEHYDROGENASE 9 337 IPR010945 GO:0006108|GO:0016615
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Rops4g00735 Rops-Chr4 19466096 19470572 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Rops4g00735 K00025 - gmx:100783188 605.52