Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g0886 ATGGATATGTTAGCTTGGGAGACTGCGGATGCGGACTAtacaattcttaaaaaaattcttattgttttgttttgtgttattttgttttggaagaTCGTTAGATACATGTTCGGTCTTCTCAAAGAAGAGAAGGAACCAATCACGGTATTGGTCACCGGTGCTGCAGGGCAAATTGGTTATGCACTTGTTCCAATGATTGCAAGAGGGGCGATGCTGGGCCCAAATCAGCCTGTGATTCTGCATATGCTTGACATTGAACCAGCAGCAGAGGCCTTAAAAGGGGTGAAGATGGAACTGATTGATGCTGCCTTTCCCCTTCTCAGagGTGTTGTTGCTACTACGGATGTTGTTGAAGCTTGCGATGATGTCAACATTGCCGTGATGGTGGGTGGATTCCCGCGGAAGGAAGGAATGGAAAGAAAAGATGTGATGTCTAAAAATGTGTCAATTTACAAGGCTCAAGCTTCTGCACTGGAGAAACATGCTGCAGCAGATTGTAAGGTACTAGTGGTTGCCAATCCAGCAAACACCAATGCTCtcattttgaaagaatttgCTCCTTCAATCCCAGAGAAAAATGTCACTTGCCTTACACGACTTGATCATAATAGAGCTTTAGGCCAAATCTCTGAGAGGCTAAATGTTCATGTCAGTGATGTGAAAAATGTCATCATTTGGGGCAATCACTCCTCAACCCAATATCCAGATGTCAACCATGCAACCGTCACCACCAGCAGTGGACAAAAGCCAGTCAGAGAATTAGTTAATGATGATAACTGGCTAAAGACTGAGTTCATCACCACTGTTCAGCAGCGTGGGGCTGCCATTATTAAAGCCAGGAAGCTGTCTAGTGCATTATCAGCAGCAAGTGCTGCATGTGATCACATACGTGATTGGGTTCTAGGTACTCCTAAGGGAACATGGGTATCAATGGGAGTGTATTCTGATGGATCTTATGGTATCCCACCTGGCCTCATTTACTCTTTCCCTGTTACATGTGAGAAAGGAGACTGGAGTATTGTTCaggGGCTCGAGATCGATCAATTCTCAACGGAAAAGATGAACAAAACGGCCATAGAGCTCGTTGAGGAGAAAACATTGGCCAAGTCATGCCTTAATTGA 1122 0.4242 MDMLAWETADADYTILKKILIVLFCVILFWKIVRYMFGLLKEEKEPITVLVTGAAGQIGYALVPMIARGAMLGPNQPVILHMLDIEPAAEALKGVKMELIDAAFPLLRGVVATTDVVEACDDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAADCKVLVVANPANTNALILKEFAPSIPEKNVTCLTRLDHNRALGQISERLNVHVSDVKNVIIWGNHSSTQYPDVNHATVTTSSGQKPVRELVNDDNWLKTEFITTVQQRGAAIIKARKLSSALSAASAACDHIRDWVLGTPKGTWVSMGVYSDGSYGIPPGLIYSFPVTCEKGDWSIVQGLEIDQFSTEKMNKTAIELVEEKTLAKSCLN 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g0886 373 PIRSF Lac_mal_DH 43 370 IPR001557 GO:0016616|GO:0019752
Ssu2g0886 373 Gene3D - 197 373 IPR015955 GO:0003824|GO:0016616
Ssu2g0886 373 PANTHER MALATE DEHYDROGENASE 26 373 IPR010945 GO:0006108|GO:0016615
Ssu2g0886 373 Pfam lactate/malate dehydrogenase, NAD binding domain 49 194 IPR001236 GO:0016491
Ssu2g0886 373 TIGRFAM MalateDH-SF1: malate dehydrogenase 44 367 IPR010945 GO:0006108|GO:0016615
Ssu2g0886 373 PANTHER MALATE DEHYDROGENASE 3, CYTOPLASMIC 26 373 - -
Ssu2g0886 373 ProSitePatterns Malate dehydrogenase active site signature. 197 209 IPR001252 GO:0006108|GO:0016615
Ssu2g0886 373 CDD MDH_cytoplasmic_cytosolic 45 368 IPR011274 GO:0006108|GO:0030060
Ssu2g0886 373 SUPERFAMILY LDH C-terminal domain-like 198 372 IPR015955 GO:0003824|GO:0016616
Ssu2g0886 373 TIGRFAM MDH_euk_cyt: malate dehydrogenase, NAD-dependent 49 369 IPR011274 GO:0006108|GO:0030060
Ssu2g0886 373 Gene3D - 44 196 - -
Ssu2g0886 373 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 198 368 IPR022383 GO:0016616
Ssu2g0886 373 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 31 196 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g0886 Ssu-Chr2 45208136 45212398 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g0886 K00025 - gmx:100783188 650.588