Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca01g01636 ATGGAATTGGAAATGTTAGCTTGGCAGATGATTAAGGACTATACAGTTCTTAAAAAAGttagtcttgttttgttatgttttgttttgttttgGAAGATCGTTAGATACATGTTTGGTCTCCTCAAAGAAGAGAAGGAACCAATCACGGTATTGGTCACTGGTGCTGCAGGGCAAATTGGTTATGCACTTGTTCCAATGATTGCAAGAGGGGCAATGCTGGGCCCAAATCAGCCTGTGATTTTGCACATGCTTGACATTGAACCAGCAGCAGAGGCCTTAAAAGGGGTGAAGATGGAACTCATTGATGCTGCTTTTCCACTTCTTAAAGGTGTTGTTGCTACTACTGATGTTGCTGAAGCTTGCAAGGATGTGAACATTGCTGTGATGGTGGGTGGATTCCCaaggaaggaaggaatggaaagaaAAGATGTGATGAGTAAAAATGTGTCAATTTACAAGGCTCAAGCCTCAGCACTTGAGAAACATGCTGCAGCAGATTGTAAGGTACTAGTGGTTGCCAATCCAGCAAACACCAATGCTCTCATTTTGAAAGAATTTGCTCCTTCAATCCCTGAGAAAAATATCACCTGCCTTACAAGACTTGATCACAATAGAGCATTAGGCCAAATCTCTGAGAAGCTAAATGTTAATGTCAGTGATGTGAAAAATGTCATCATTTGGGGGAATCACTCCTCAACCCAATATCCAGATGTCAACCATGCAACTGCCACCACCAGCAGTGGAGAGAAGCCAGTCAGAGAATTAGTTAATGATGATAACTGGCTAAACACTGAGTTCATCACCACTGTTCAGCAGCGTGGGGCTGCCATCATTAAAGCCAGGAAGCTCTCTAGTGCATTATCTGCAGCAAGTTCTGCATGTGATCACATACATGATTGGGTTGTAGGTACTCCTAAGGGAACATGGGTATCAATGGGAGTGTATTCTGATGGATCTTATGGTGTCCCAAGTGGCCTCATTTACTCTTTCNNNNNNNNNNNNNNNTCTTTCCCTGTTACATGTGAGAAAGGAGACTGGAGTATTGTTCAAGGGCTCAAGATCGATGAATTCTCACAGGACAAGATGGACAAAACAGCCGCAGAGCTCGTTGAGGAGAAAGAATTGGCCAAGTCATGCCTTAATTGA 1146 0.4084 MELEMLAWQMIKDYTVLKKVSLVLLCFVLFWKIVRYMFGLLKEEKEPITVLVTGAAGQIGYALVPMIARGAMLGPNQPVILHMLDIEPAAEALKGVKMELIDAAFPLLKGVVATTDVAEACKDVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEKHAAADCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISEKLNVNVSDVKNVIIWGNHSSTQYPDVNHATATTSSGEKPVRELVNDDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIHDWVVGTPKGTWVSMGVYSDGSYGVPSGLIYSFXXXXXSFPVTCEKGDWSIVQGLKIDEFSQDKMDKTAAELVEEKELAKSCLN 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca01g01636 381 PANTHER MALATE DEHYDROGENASE 3, CYTOPLASMIC 28 381 - -
Cca01g01636 381 CDD MDH_cytoplasmic_cytosolic 46 376 IPR011274 GO:0006108|GO:0030060
Cca01g01636 381 TIGRFAM MalateDH-SF1: malate dehydrogenase 45 375 IPR010945 GO:0006108|GO:0016615
Cca01g01636 381 PIRSF Lac_mal_DH 44 379 IPR001557 GO:0016616|GO:0019752
Cca01g01636 381 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 199 378 IPR022383 GO:0016616
Cca01g01636 381 PANTHER MALATE DEHYDROGENASE 28 381 IPR010945 GO:0006108|GO:0016615
Cca01g01636 381 Pfam lactate/malate dehydrogenase, NAD binding domain 50 195 IPR001236 GO:0016491
Cca01g01636 381 TIGRFAM MDH_euk_cyt: malate dehydrogenase, NAD-dependent 50 377 IPR011274 GO:0006108|GO:0030060
Cca01g01636 381 Gene3D - 45 197 - -
Cca01g01636 381 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 32 197 IPR036291 -
Cca01g01636 381 Gene3D - 198 381 IPR015955 GO:0003824|GO:0016616
Cca01g01636 381 SUPERFAMILY LDH C-terminal domain-like 199 380 IPR015955 GO:0003824|GO:0016616
Cca01g01636 381 ProSitePatterns Malate dehydrogenase active site signature. 198 210 IPR001252 GO:0006108|GO:0016615
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca01g01636 Cca-Chr1 37558944 37563892 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca01g01636 K00025 - gmx:100783188 646.736