Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa4g00030 ATGAACATGGAAATGTTAGCTTTGGAAATTTTGGACAATACAGTCCTTAAAAAAACGGTTCTTGTTTTCTTTTGTGGTTTTTTGTTTTGGAAGATCGTTAGATACATGTGTGGTCTTCTCAAAGTTGACAAAGAACCTGTCACCATATTGGTCACCGGTGCTGCAGGACAAATTGGTTATGCACTTGTTCCAATGATTGCAAGAGGGATGGTGTTAGGTCCAAATCAACCTGTGATTCTACATATGCTTGAGACTGAAGCAGGATTTGAGGCACTTAAAGGGGTCAAAATGGAACTAATTGATGCTGCTTTCCCACTTCTTAAAGGTGTTGTTATTACTACTGATGTCGTTGAAGCTTGTAAGGATGTTAATATTGCTGTTATGGTTGCTGGAATCCCAAGGAAAGAAGGAATGGAAAGAAAAGATGTAATGTCTAGAAATGTTTCTATTTACAAGGCTCAAGCTTCGGCTTTGGAAGAACATGCTGCTGCAGATTGTAAAGTGCTAGTGGTTGCAAATCCAGCAAACACAAATGCTCTAATATTGAAAGAATTTGCTCCATCAATCCCTGAGAAAAACATCACATGTCTTACAAGACTTGATCATAATAGAGCATTAGGCCAAATCTCTGAGAAGCTTAATGTTCATGTTAGTGATGTGAAAAATGTCATCATCTGGGGCAATCACTCCTCAACTCAATATCCAGATGTCAATCATGCAACCGTCGCAACTAGTAATGGCCAGAAAAATGTCAGAGAATTAGTTTCCGATGATTATTGGCTAAACAATGAGTTCATCACAACGGTTCAGCAACGTGGAGGTGCCATTATCAAAGCAAGGAAGTTGTCTAGTGCATTATCAGCAGCAAGTGCTGCTTGTGATCATATACATGATTGGGTTGTAGGTACACCTAAGGGAACATGGGTGTCAATGGGAGTATATTCTGATGGATCTTATGGAATTCAACCTGGTCTCATTTACTCTTTTCCTGTTACATGTGACAAAGGAGAATGGAGTATAGTACAAGGGCTCAAGATTGATGAATTATCAAGGGAAAAGTTGGATAAAACGGCTCAAGAACTCATTGAGGAGAAAGCATTGGCTTACTCATGCCTTTAG 1119 0.3923 MNMEMLALEILDNTVLKKTVLVFFCGFLFWKIVRYMCGLLKVDKEPVTILVTGAAGQIGYALVPMIARGMVLGPNQPVILHMLETEAGFEALKGVKMELIDAAFPLLKGVVITTDVVEACKDVNIAVMVAGIPRKEGMERKDVMSRNVSIYKAQASALEEHAAADCKVLVVANPANTNALILKEFAPSIPEKNITCLTRLDHNRALGQISEKLNVHVSDVKNVIIWGNHSSTQYPDVNHATVATSNGQKNVRELVSDDYWLNNEFITTVQQRGGAIIKARKLSSALSAASAACDHIHDWVVGTPKGTWVSMGVYSDGSYGIQPGLIYSFPVTCDKGEWSIVQGLKIDELSREKLDKTAQELIEEKALAYSCL 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa4g00030 372 Gene3D - 44 196 - -
Vifa4g00030 372 SUPERFAMILY LDH C-terminal domain-like 198 371 IPR015955 GO:0003824|GO:0016616
Vifa4g00030 372 Gene3D - 197 372 IPR015955 GO:0003824|GO:0016616
Vifa4g00030 372 PANTHER MALATE DEHYDROGENASE 44 371 IPR010945 GO:0006108|GO:0016615
Vifa4g00030 372 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 198 366 IPR022383 GO:0016616
Vifa4g00030 372 NCBIfam malate dehydrogenase, NAD-dependent 49 370 IPR011274 GO:0006108|GO:0030060
Vifa4g00030 372 Pfam lactate/malate dehydrogenase, NAD binding domain 49 194 IPR001236 GO:0016491
Vifa4g00030 372 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 37 196 IPR036291 -
Vifa4g00030 372 FunFam Malate dehydrogenase 197 372 - -
Vifa4g00030 372 FunFam Malate dehydrogenase 44 196 - -
Vifa4g00030 372 PIRSF Lac_mal_DH 43 369 IPR001557 GO:0016616|GO:0019752
Vifa4g00030 372 NCBIfam malate dehydrogenase 44 367 IPR010945 GO:0006108|GO:0016615
Vifa4g00030 372 ProSitePatterns Malate dehydrogenase active site signature. 197 209 IPR001252 GO:0006108|GO:0016615
Vifa4g00030 372 CDD MDH_cytoplasmic_cytosolic 45 369 IPR011274 GO:0006108|GO:0030060
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa4g00030 Vifa-Chr4 5166453 5169043 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa4g00030 K00025 - gmx:100783188 601.668