Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod07g2217 ATGGAAATTCCTCTTCGGGAGATTGTGAATGGGGACTATAAAGTTCTTGAAAACAAGATATTGGAGTTTGTGGACTATACAGTTCTTCAAAAAATTCTTCTTGTTTTAATTTGCATTTCTTTGTTTTGGAAGATCATTAGATATATGTGTGGTCTTCTCCATGCAGAGAAGGAACCAGTCACGGTGCTGGTCACCGGTGCTGCAGGGCAAATTGGTTATGCGCTTGTCCCAATGATAGCAAGAGGGGCGATGCTAGGCCCAAATCAGCCTGTAATTGTGCACATGCTTGACATTGAACCAGCAGCAGAGGCCTTAAAAGGAGTGAAGATGGAACTGATTGATGCTGCTTTACCACTTCTTAAAGGTGTTGTTGCTACTACGGATGTTGTTGAAGCTTGCAAGGGTGTCAACATTGCTGTTATGGTGGGTGGATTCCCACGAAAGGAAGGGATGGAAAGAAAAGATGTGATGTCTAAAAACGTATCAATTTACAAGGCCCAAGCTTCAGCCCTTGAGCAGCATGCTGCTGCAGATTGTAAGGTGCTAGTGGTTGCCAATCCAGCAAACACCAATGCTCTCATCTTGAAAGAATATGCGCCTTCAATCCCAGAGAAGAACATCACCTGTCTCACACGACTTGATCACAACAGAGCATTAGGCCAAATCTCTGAGAGGCTAAATGTTCATGTTAGTGATGTCAAAAATGTCATCATATGGGGCAATCACTCCTCAACCCAATATCCAGACGTCAACCATGCAACCGTTGGCCAGAAGCCCGTCAGGGAAGCAGTTGCTGATGATAATTGGCTAAACACTGAATTCATCACCACTGTTCAGCAGCGTGGGGCTGCAATTATTAAAGCAAGGAAGCTGTCTAGTGCATTGTCAGCAGCTAGTTCTGCTTGTGATCATATACGTGACTGGGTTCTAGGCACTCCTAAGGGAACATGGGTATCAATGGGAGTGTATTCTGATGGATCTTATGGTATCCAGCGTGGCCTCATTTACTCTTTCCCTGTAACGTGTGAGAAAGGAGAATGGAGTATTGTACAGTGGCTCAAGATAGATCAATTCTCAAAGGAAAAGATGGATAAAACGGCCCAAGAGCTTATTGAGGAGAAAACATTGGCTATGACATGTCTCAATTGA 1149 0.4395 MEIPLREIVNGDYKVLENKILEFVDYTVLQKILLVLICISLFWKIIRYMCGLLHAEKEPVTVLVTGAAGQIGYALVPMIARGAMLGPNQPVIVHMLDIEPAAEALKGVKMELIDAALPLLKGVVATTDVVEACKGVNIAVMVGGFPRKEGMERKDVMSKNVSIYKAQASALEQHAAADCKVLVVANPANTNALILKEYAPSIPEKNITCLTRLDHNRALGQISERLNVHVSDVKNVIIWGNHSSTQYPDVNHATVGQKPVREAVADDNWLNTEFITTVQQRGAAIIKARKLSSALSAASSACDHIRDWVLGTPKGTWVSMGVYSDGSYGIQRGLIYSFPVTCEKGEWSIVQWLKIDQFSKEKMDKTAQELIEEKTLAMTCLN* 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod07g2217 382 Pfam lactate/malate dehydrogenase, NAD binding domain 61 207 IPR001236 GO:0016491
Dod07g2217 382 CDD MDH_cytoplasmic_cytosolic 58 378 IPR011274 GO:0006108|GO:0030060
Dod07g2217 382 PIRSF Lac_mal_DH 56 379 IPR001557 GO:0016616|GO:0019752
Dod07g2217 382 ProSitePatterns Malate dehydrogenase active site signature. 210 222 IPR001252 GO:0006108|GO:0016615
Dod07g2217 382 PANTHER MALATE DEHYDROGENASE 3, CYTOPLASMIC 32 382 - -
Dod07g2217 382 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 52 209 IPR036291 -
Dod07g2217 382 Gene3D - 210 382 IPR015955 GO:0003824|GO:0016616
Dod07g2217 382 PANTHER MALATE DEHYDROGENASE 32 382 IPR010945 GO:0006108|GO:0016615
Dod07g2217 382 TIGRFAM MalateDH-SF1: malate dehydrogenase 57 376 IPR010945 GO:0006108|GO:0016615
Dod07g2217 382 TIGRFAM MDH_euk_cyt: malate dehydrogenase, NAD-dependent 62 378 IPR011274 GO:0006108|GO:0030060
Dod07g2217 382 Gene3D - 57 209 - -
Dod07g2217 382 Pfam lactate/malate dehydrogenase, alpha/beta C-terminal domain 211 375 IPR022383 GO:0016616
Dod07g2217 382 SUPERFAMILY LDH C-terminal domain-like 211 381 IPR015955 GO:0003824|GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod07g2217 Dod-Chr7 53894320 53897828 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod07g2217 K00025 - gmx:100783188 624.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod07g2217 07 53894320 53897828 Dod07g2217 07 53894320 53897828 ECH